PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
CLame660760082680 Alkaloid PYKS high pass
CLame663660115810 Alkaloid PYKS low borderline
CLame665570147280 Alkaloid PYKS low borderline
CLame665880152290 Alkaloid PYKS low borderline
CLame666260160090 Alkaloid PYKS high pass
CLame666470165260 Alkaloid PYKS low borderline
CLame666520166000 Alkaloid PYKS low borderline
CLame666700169790 Alkaloid PYKS low borderline
CLame666820171990 Alkaloid PYKS low borderline
CLame666920174260 Alkaloid PYKS medium pass
CLame666920174280 Alkaloid PYKS high pass
CLame668220211970 Alkaloid PYKS low borderline
CLame668620224990 Alkaloid PYKS high pass
CLame669080235090 Alkaloid PYKS low borderline
CLame669440237280 Alkaloid PYKS high pass
CLame670400239240 Alkaloid PYKS medium pass
CLame670680240780 Alkaloid PYKS high pass
CLame606790011940 Alkaloid SGD medium pass
CLame653590039060 Alkaloid SGD medium pass
CLame661930094000 Alkaloid SGD low borderline
CLame662710103610 Alkaloid SGD medium pass
CLame663290111040 Alkaloid SGD medium pass
CLame665400143150 Alkaloid SGD medium pass
CLame665730149440 Alkaloid SGD low borderline
CLame666630167900 Alkaloid SGD medium pass
CLame667970204520 Alkaloid SGD low borderline
CLame669980238600 Alkaloid SGD medium pass
CLame618190014820 Alkaloid SLS medium borderline
CLame651650033530 Alkaloid SLS medium borderline
CLame654100040570 Alkaloid SLS medium borderline
CLame657090055350 Alkaloid SLS medium borderline
CLame657090055360 Alkaloid SLS medium borderline
CLame658110061190 Alkaloid SLS medium borderline
CLame662790104530 Alkaloid SLS medium borderline
CLame666030155380 Alkaloid SLS medium borderline
CLame666330161280 Alkaloid SLS medium borderline
CLame666330161300 Alkaloid SLS medium borderline
CLame666330161340 Alkaloid SLS medium borderline
CLame667760199100 Alkaloid SLS medium borderline
CLame668030206150 Alkaloid SLS medium borderline
CLame668030206170 Alkaloid SLS medium borderline
CLame668950231390 Alkaloid SLS medium borderline
CLame669180235510 Alkaloid SLS medium borderline
CLame451010000450 Alkaloid STR low borderline
CLame613850013760 Alkaloid STR low borderline
CLame616240014240 Alkaloid STR low borderline
CLame636670018480 Alkaloid STR low borderline
CLame636670018520 Alkaloid STR low borderline
CLame653840039980 Alkaloid STR low borderline
CLame654250041290 Alkaloid STR low borderline