PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

877
Candidate Protein Records
648
Pathway-Level Records
1636
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
CLame664320123820 Alkaloid T3O medium pass
CLame664610127640 Alkaloid T3O medium pass
CLame664750129650 Alkaloid T3O medium borderline
CLame664750129660 Alkaloid T3O medium borderline
CLame664750129670 Alkaloid T3O medium borderline
CLame664860132530 Alkaloid T3O low borderline
CLame664860132540 Alkaloid T3O low borderline
CLame665170138640 Alkaloid T3O medium borderline
CLame665490145190 Alkaloid T3O medium borderline
CLame666410163430 Alkaloid T3O medium borderline
CLame666890173770 Alkaloid T3O medium pass
CLame667040178430 Alkaloid T3O medium borderline
CLame667200182760 Alkaloid T3O medium borderline
CLame667450189310 Alkaloid T3O medium borderline
CLame667630194730 Alkaloid T3O medium pass
CLame667830200970 Alkaloid T3O medium pass
CLame667830201000 Alkaloid T3O medium pass
CLame668500221090 Alkaloid T3O low borderline
CLame669180235460 Alkaloid T3O low borderline
CLame613060013200 Alkaloid TDC medium pass
CLame659990075950 Alkaloid TDC low borderline
CLame663730116840 Alkaloid TDC low borderline
CLame663980119700 Alkaloid TDC low borderline
CLame665600147560 Alkaloid TDC low borderline
CLame653230038090 Alkaloid TRI/TRII medium pass
CLame654370042060 Alkaloid TRI/TRII low borderline
CLame654440042270 Alkaloid TRI/TRII medium pass
CLame660520079730 Alkaloid TRI/TRII low borderline
CLame660520079750 Alkaloid TRI/TRII low borderline
CLame660520079760 Alkaloid TRI/TRII low borderline
CLame662650102920 Alkaloid TRI/TRII medium pass
CLame664560126950 Alkaloid TRI/TRII medium pass
CLame665780150560 Alkaloid TRI/TRII low borderline
CLame666000154590 Alkaloid TRI/TRII low borderline
CLame666020154930 Alkaloid TRI/TRII medium pass
CLame666100156730 Alkaloid TRI/TRII low borderline
CLame666100156740 Alkaloid TRI/TRII low borderline
CLame666290160540 Alkaloid TRI/TRII medium pass
CLame666290160600 Alkaloid TRI/TRII medium pass
CLame668330215010 Alkaloid TRI/TRII medium pass
CLame669220236350 Alkaloid TRI/TRII low borderline
CLame659790074180 Alkaloid TYDC_DDC medium borderline
CLame667880202430 Alkaloid TYDC_DDC medium borderline
CLame668110207820 Alkaloid TYDC_DDC medium borderline
CLame450180000300 Flavonoid 4CL low borderline
CLame613060013190 Flavonoid 4CL medium pass
CLame655000045090 Flavonoid 4CL medium pass
CLame655460047170 Flavonoid 4CL medium pass
CLame655710048510 Flavonoid 4CL low borderline
CLame655950049240 Flavonoid 4CL low borderline