PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
GhirA01G0020740.1 Alkaloid 16OMT medium borderline
GhirA03G0017790.1 Alkaloid 16OMT medium borderline
GhirA03G0017800.1 Alkaloid 16OMT medium borderline
GhirA03G0017810.1 Alkaloid 16OMT medium borderline
GhirA04G0015980.1 Alkaloid 16OMT medium borderline
GhirA04G0015990.1 Alkaloid 16OMT medium borderline
GhirA04G0016000.1 Alkaloid 16OMT medium borderline
GhirA04G0016010.1 Alkaloid 16OMT medium borderline
GhirA04G0016020.1 Alkaloid 16OMT medium borderline
GhirA05G0007370.1 Alkaloid 16OMT medium borderline
GhirA05G0021450.1 Alkaloid 16OMT low borderline
GhirA06G0002150.1 Alkaloid 16OMT low borderline
GhirA07G0018280.1 Alkaloid 16OMT medium borderline
GhirA08G0012780.1 Alkaloid 16OMT medium borderline
GhirA08G0024460.1 Alkaloid 16OMT medium borderline
GhirA09G0012600.1 Alkaloid 16OMT medium borderline
GhirA10G0011370.1 Alkaloid 16OMT medium borderline
GhirA10G0021100.1 Alkaloid 16OMT medium borderline
GhirA10G0021110.1 Alkaloid 16OMT medium borderline
GhirA10G0021120.1 Alkaloid 16OMT medium borderline
GhirA10G0021120.2 Alkaloid 16OMT medium borderline
GhirA10G0021890.1 Alkaloid 16OMT medium borderline
GhirA10G0021910.1 Alkaloid 16OMT medium borderline
GhirA11G0031780.1 Alkaloid 16OMT medium borderline
GhirA12G0003850.1 Alkaloid 16OMT medium borderline
GhirA12G0003860.1 Alkaloid 16OMT medium borderline
GhirA12G0026660.1 Alkaloid 16OMT medium borderline
GhirA12G0026670.1 Alkaloid 16OMT medium borderline
GhirA12G0027090.1 Alkaloid 16OMT medium borderline
GhirA12G0027090.2 Alkaloid 16OMT medium borderline
GhirA13G0018160.1 Alkaloid 16OMT medium borderline
GhirD01G0022660.1 Alkaloid 16OMT medium borderline
GhirD02G0021570.1 Alkaloid 16OMT medium borderline
GhirD02G0021580.1 Alkaloid 16OMT medium borderline
GhirD02G0021600.1 Alkaloid 16OMT medium borderline
GhirD04G0020260.1 Alkaloid 16OMT medium borderline
GhirD04G0020270.1 Alkaloid 16OMT medium borderline
GhirD04G0020280.1 Alkaloid 16OMT medium borderline
GhirD04G0020290.1 Alkaloid 16OMT medium borderline
GhirD04G0020310.1 Alkaloid 16OMT medium borderline
GhirD05G0007680.1 Alkaloid 16OMT medium borderline
GhirD05G0022140.1 Alkaloid 16OMT low borderline
GhirD06G0002100.1 Alkaloid 16OMT low borderline
GhirD07G0019420.1 Alkaloid 16OMT medium borderline
GhirD07G0019430.1 Alkaloid 16OMT medium borderline
GhirD08G0012890.1 Alkaloid 16OMT medium borderline
GhirD08G0026200.1 Alkaloid 16OMT medium borderline
GhirD09G0012910.1 Alkaloid 16OMT medium borderline
GhirD10G0019360.1 Alkaloid 16OMT medium borderline
GhirD10G0023060.1 Alkaloid 16OMT medium borderline