PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
GhirA01G0009300.1 Alkaloid IO medium borderline
GhirA01G0021410.1 Alkaloid IO medium borderline
GhirA02G0007340.1 Alkaloid IO medium borderline
GhirA02G0007340.2 Alkaloid IO medium borderline
GhirA02G0007340.3 Alkaloid IO medium borderline
GhirA02G0011040.1 Alkaloid IO medium borderline
GhirA02G0015370.1 Alkaloid IO medium borderline
GhirA03G0006320.1 Alkaloid IO low borderline
GhirA04G0009160.1 Alkaloid IO medium borderline
GhirA04G0009170.1 Alkaloid IO medium borderline
GhirA04G0014690.1 Alkaloid IO low borderline
GhirA04G0016600.1 Alkaloid IO medium borderline
GhirA05G0007140.1 Alkaloid IO medium borderline
GhirA05G0011510.1 Alkaloid IO medium pass
GhirA05G0020920.1 Alkaloid IO medium borderline
GhirA05G0027730.1 Alkaloid IO low borderline
GhirA05G0027750.1 Alkaloid IO medium borderline
GhirA06G0000830.2 Alkaloid IO medium pass
GhirA06G0001490.1 Alkaloid IO medium borderline
GhirA06G0001510.1 Alkaloid IO medium borderline
GhirA06G0022910.1 Alkaloid IO medium borderline
GhirA07G0017900.1 Alkaloid IO medium borderline
GhirA08G0001480.1 Alkaloid IO low borderline
GhirA08G0012370.1 Alkaloid IO medium borderline
GhirA08G0014260.1 Alkaloid IO medium borderline
GhirA09G0021920.1 Alkaloid IO medium borderline
GhirA11G0019990.1 Alkaloid IO low borderline
GhirA11G0036230.1 Alkaloid IO medium borderline
GhirA12G0003230.1 Alkaloid IO low borderline
GhirA12G0029050.1 Alkaloid IO medium borderline
GhirA12G0029070.1 Alkaloid IO medium borderline
GhirA12G0029080.1 Alkaloid IO medium borderline
GhirA13G0013510.1 Alkaloid IO medium borderline
GhirD01G0023210.1 Alkaloid IO medium borderline
GhirD02G0008280.1 Alkaloid IO medium borderline
GhirD02G0008310.1 Alkaloid IO medium borderline
GhirD02G0008310.2 Alkaloid IO medium borderline
GhirD02G0010980.1 Alkaloid IO low borderline
GhirD02G0010980.2 Alkaloid IO low borderline
GhirD02G0010980.3 Alkaloid IO low borderline
GhirD02G0010980.4 Alkaloid IO low borderline
GhirD03G0010050.1 Alkaloid IO medium borderline
GhirD04G0012450.1 Alkaloid IO low borderline
GhirD04G0012920.1 Alkaloid IO medium borderline
GhirD04G0021060.1 Alkaloid IO medium pass
GhirD05G0004580.1 Alkaloid IO medium borderline
GhirD05G0007450.1 Alkaloid IO medium borderline
GhirD05G0011900.1 Alkaloid IO medium pass
GhirD05G0016340.1 Alkaloid IO low borderline
GhirD05G0021620.1 Alkaloid IO medium borderline