PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
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Gene Pathway Family Confidence Status
GhirA02G0014490.1 Flavonoid DFR medium pass
GhirA03G0020680.1 Flavonoid DFR low borderline
GhirA05G0012630.1 Flavonoid DFR medium borderline
GhirA05G0029370.1 Flavonoid DFR medium borderline
GhirA07G0016470.1 Flavonoid DFR medium borderline
GhirA08G0010570.1 Flavonoid DFR medium borderline
GhirA08G0010570.2 Flavonoid DFR medium borderline
GhirA08G0010570.3 Flavonoid DFR medium borderline
GhirA08G0017560.1 Flavonoid DFR medium borderline
GhirA08G0022630.1 Flavonoid DFR medium borderline
GhirA08G0022630.2 Flavonoid DFR medium borderline
GhirA08G0024010.1 Flavonoid DFR low borderline
GhirA09G0012720.1 Flavonoid DFR medium borderline
GhirA11G0008290.1 Flavonoid DFR medium borderline
GhirA11G0008290.2 Flavonoid DFR medium borderline
GhirA12G0001330.1 Flavonoid DFR medium borderline
GhirA12G0001340.1 Flavonoid DFR medium borderline
GhirA12G0001340.2 Flavonoid DFR medium borderline
GhirA13G0011820.1 Flavonoid DFR low borderline
GhirD01G0023510.1 Flavonoid DFR medium pass
GhirD03G0005930.1 Flavonoid DFR medium borderline
GhirD03G0006020.1 Flavonoid DFR medium borderline
GhirD05G0030300.1 Flavonoid DFR medium borderline
GhirD05G0030320.1 Flavonoid DFR medium borderline
GhirD07G0017170.1 Flavonoid DFR medium borderline
GhirD08G0010690.1 Flavonoid DFR medium borderline
GhirD08G0014010.1 Flavonoid DFR medium borderline
GhirD08G0019160.1 Flavonoid DFR medium borderline
GhirD08G0019160.2 Flavonoid DFR medium borderline
GhirD08G0024360.1 Flavonoid DFR medium borderline
GhirD08G0024360.2 Flavonoid DFR medium borderline
GhirD08G0024360.3 Flavonoid DFR medium borderline
GhirD08G0025690.1 Flavonoid DFR low borderline
GhirD12G0001370.1 Flavonoid DFR medium borderline
GhirD13G0012810.1 Flavonoid DFR low borderline