PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
GhirA01G0008230.1 Steroid CYP90D1 medium borderline
GhirA01G0009180.1 Steroid CYP90D1 low borderline
GhirA01G0021400.1 Steroid CYP90D1 low borderline
GhirA02G0002430.1 Steroid CYP90D1 low borderline
GhirA02G0002710.1 Steroid CYP90D1 low borderline
GhirA02G0002740.1 Steroid CYP90D1 low borderline
GhirA02G0002800.1 Steroid CYP90D1 low borderline
GhirA02G0002830.1 Steroid CYP90D1 low borderline
GhirA02G0002860.1 Steroid CYP90D1 low borderline
GhirA02G0002880.1 Steroid CYP90D1 low borderline
GhirA02G0002880.2 Steroid CYP90D1 low borderline
GhirA02G0002890.1 Steroid CYP90D1 low borderline
GhirA02G0002910.1 Steroid CYP90D1 low borderline
GhirA02G0007340.1 Steroid CYP90D1 medium borderline
GhirA02G0007340.2 Steroid CYP90D1 medium borderline
GhirA04G0002010.1 Steroid CYP90D1 low borderline
GhirA04G0006310.1 Steroid CYP90D1 low borderline
GhirA04G0006340.1 Steroid CYP90D1 low borderline
GhirA04G0006360.1 Steroid CYP90D1 low borderline
GhirA04G0009170.1 Steroid CYP90D1 low borderline
GhirA04G0014650.1 Steroid CYP90D1 low borderline
GhirA04G0016590.1 Steroid CYP90D1 low borderline
GhirA04G0016600.1 Steroid CYP90D1 low borderline
GhirA04G0018340.1 Steroid CYP90D1 low borderline
GhirA04G0018350.1 Steroid CYP90D1 low borderline
GhirA05G0006620.1 Steroid CYP90D1 low borderline
GhirA05G0014310.1 Steroid CYP90D1 medium borderline
GhirA05G0014310.2 Steroid CYP90D1 medium borderline
GhirA05G0020670.1 Steroid CYP90D1 low borderline
GhirA05G0020670.2 Steroid CYP90D1 low borderline
GhirA05G0042620.1 Steroid CYP90D1 low borderline
GhirA05G0042880.1 Steroid CYP90D1 low borderline
GhirA06G0001490.1 Steroid CYP90D1 low borderline
GhirA06G0001500.1 Steroid CYP90D1 low borderline
GhirA06G0018250.1 Steroid CYP90D1 medium borderline
GhirA07G0006550.1 Steroid CYP90D1 low borderline
GhirA07G0010600.1 Steroid CYP90D1 low borderline
GhirA07G0010610.1 Steroid CYP90D1 low borderline
GhirA08G0017860.1 Steroid CYP90D1 low borderline
GhirA08G0019610.1 Steroid CYP90D1 medium borderline
GhirA08G0019640.1 Steroid CYP90D1 low borderline
GhirA08G0019660.1 Steroid CYP90D1 low borderline
GhirA08G0027170.1 Steroid CYP90D1 low borderline
GhirA09G0014060.1 Steroid CYP90D1 low borderline
GhirA09G0014110.1 Steroid CYP90D1 low borderline
GhirA10G0001460.1 Steroid CYP90D1 medium borderline
GhirA10G0006010.1 Steroid CYP90D1 low borderline
GhirA10G0026270.1 Steroid CYP90D1 medium borderline
GhirA11G0014830.1 Steroid CYP90D1 low borderline
GhirA11G0016850.1 Steroid CYP90D1 low borderline