PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status
GhirA01G0000660.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0000660.2 Alkaloid CODM/T6ODM medium borderline
GhirA01G0000660.3 Alkaloid CODM/T6ODM medium borderline
GhirA01G0000660.4 Alkaloid CODM/T6ODM medium borderline
GhirA01G0003400.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0003830.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0003870.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0003880.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0003890.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0004040.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0004510.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0004520.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0006100.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0007810.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0014550.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0023720.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0024900.1 Alkaloid CODM/T6ODM medium borderline
GhirA01G0024900.2 Alkaloid CODM/T6ODM medium borderline
GhirA02G0004330.1 Alkaloid CODM/T6ODM medium borderline
GhirA02G0004340.1 Alkaloid CODM/T6ODM medium borderline
GhirA02G0004350.1 Alkaloid CODM/T6ODM medium borderline
GhirA02G0004360.1 Alkaloid CODM/T6ODM medium borderline
GhirA02G0004390.1 Alkaloid CODM/T6ODM medium borderline
GhirA03G0012750.1 Alkaloid CODM/T6ODM medium borderline
GhirA03G0013600.1 Alkaloid CODM/T6ODM medium borderline
GhirA04G0010900.1 Alkaloid CODM/T6ODM medium borderline
GhirA05G0004990.1 Alkaloid CODM/T6ODM low borderline
GhirA05G0004990.2 Alkaloid CODM/T6ODM low borderline
GhirA05G0017840.1 Alkaloid CODM/T6ODM medium borderline
GhirA05G0023560.1 Alkaloid CODM/T6ODM medium borderline
GhirA05G0035650.1 Alkaloid CODM/T6ODM medium borderline
GhirA05G0037760.1 Alkaloid CODM/T6ODM medium borderline
GhirA06G0005790.1 Alkaloid CODM/T6ODM medium borderline
GhirA06G0005810.1 Alkaloid CODM/T6ODM medium borderline
GhirA06G0005810.2 Alkaloid CODM/T6ODM medium borderline
GhirA06G0005820.1 Alkaloid CODM/T6ODM medium borderline
GhirA06G0020920.1 Alkaloid CODM/T6ODM medium borderline
GhirA06G0021990.1 Alkaloid CODM/T6ODM medium borderline
GhirA07G0001140.1 Alkaloid CODM/T6ODM medium borderline
GhirA07G0004630.1 Alkaloid CODM/T6ODM medium borderline
GhirA07G0004850.1 Alkaloid CODM/T6ODM medium borderline
GhirA07G0005270.1 Alkaloid CODM/T6ODM medium borderline
GhirA07G0016380.1 Alkaloid CODM/T6ODM medium borderline
GhirA07G0016390.1 Alkaloid CODM/T6ODM medium borderline
GhirA07G0023940.1 Alkaloid CODM/T6ODM medium borderline
GhirA08G0000760.1 Alkaloid CODM/T6ODM medium borderline
GhirA08G0006040.1 Alkaloid CODM/T6ODM medium borderline
GhirA08G0012490.1 Alkaloid CODM/T6ODM medium borderline
GhirA08G0018780.1 Alkaloid CODM/T6ODM medium borderline
GhirA08G0018800.1 Alkaloid CODM/T6ODM medium borderline