PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status
GhirA01G0001770.1 Alkaloid TYDC_DDC medium borderline
GhirA01G0001790.1 Alkaloid TYDC_DDC medium borderline
GhirA05G0007530.1 Alkaloid TYDC_DDC low borderline
GhirA05G0007530.2 Alkaloid TYDC_DDC low borderline
GhirA07G0008300.1 Alkaloid TYDC_DDC medium borderline
GhirA07G0017260.1 Alkaloid TYDC_DDC medium borderline
GhirA07G0017260.2 Alkaloid TYDC_DDC medium borderline
GhirA07G0017260.4 Alkaloid TYDC_DDC medium borderline
GhirA10G0020060.1 Alkaloid TYDC_DDC medium borderline
GhirA13G0018500.1 Alkaloid TYDC_DDC medium borderline
GhirA13G0018520.1 Alkaloid TYDC_DDC medium borderline
GhirD01G0001630.1 Alkaloid TYDC_DDC medium borderline
GhirD07G0008480.1 Alkaloid TYDC_DDC medium borderline
GhirD07G0018050.1 Alkaloid TYDC_DDC medium borderline
GhirD10G0021850.1 Alkaloid TYDC_DDC medium borderline
GhirD13G0020200.1 Alkaloid TYDC_DDC medium borderline