PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
GhirA03G0007090.1 Alkaloid PMT low borderline
GhirA03G0007090.2 Alkaloid PMT low borderline
GhirA03G0015940.1 Alkaloid PMT medium borderline
GhirA05G0005760.1 Alkaloid PMT low borderline
GhirA05G0012450.1 Alkaloid PMT low borderline
GhirA05G0012450.2 Alkaloid PMT low borderline
GhirA05G0019050.1 Alkaloid PMT low borderline
GhirA05G0035820.1 Alkaloid PMT low borderline
GhirA05G0036360.1 Alkaloid PMT medium pass
GhirA06G0009200.1 Alkaloid PMT medium pass
GhirA07G0007060.1 Alkaloid PMT medium borderline
GhirA08G0010780.1 Alkaloid PMT medium borderline
GhirA08G0010780.2 Alkaloid PMT medium borderline
GhirA08G0018560.1 Alkaloid PMT low borderline
GhirA08G0021880.1 Alkaloid PMT medium borderline
GhirA10G0007750.1 Alkaloid PMT medium pass
GhirA10G0007750.2 Alkaloid PMT medium pass
GhirA10G0013090.1 Alkaloid PMT low borderline
GhirA10G0026770.1 Alkaloid PMT low borderline
GhirA11G0011570.1 Alkaloid PMT medium pass
GhirA12G0027600.1 Alkaloid PMT medium borderline
GhirA12G0027600.2 Alkaloid PMT medium borderline
GhirA12G0027600.3 Alkaloid PMT medium borderline
GhirA13G0011890.1 Alkaloid PMT medium pass
GhirA13G0011900.1 Alkaloid PMT medium pass
GhirA13G0017680.1 Alkaloid PMT low borderline
GhirD02G0019420.1 Alkaloid PMT medium borderline
GhirD03G0013210.1 Alkaloid PMT low borderline
GhirD03G0013250.1 Alkaloid PMT low borderline
GhirD04G0008320.1 Alkaloid PMT low borderline
GhirD04G0008870.1 Alkaloid PMT medium pass
GhirD05G0005810.1 Alkaloid PMT low borderline
GhirD05G0005830.1 Alkaloid PMT low borderline
GhirD05G0005950.1 Alkaloid PMT low borderline
GhirD05G0012800.1 Alkaloid PMT low borderline
GhirD05G0019660.1 Alkaloid PMT low borderline
GhirD06G0009780.1 Alkaloid PMT medium pass
GhirD07G0007250.1 Alkaloid PMT medium borderline
GhirD08G0011740.1 Alkaloid PMT medium borderline
GhirD08G0020180.1 Alkaloid PMT low borderline
GhirD10G0009310.1 Alkaloid PMT medium pass
GhirD10G0009310.2 Alkaloid PMT medium pass
GhirD10G0017210.1 Alkaloid PMT low borderline
GhirD10G0029900.1 Alkaloid PMT low borderline
GhirD11G0003020.1 Alkaloid PMT low borderline
GhirD11G0011920.1 Alkaloid PMT medium pass
GhirD11G0026240.1 Alkaloid PMT low borderline
GhirD11G0026260.1 Alkaloid PMT low borderline
GhirD12G0028450.1 Alkaloid PMT medium borderline
GhirD12G0028450.2 Alkaloid PMT medium borderline