PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCoAOMT
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Gene Pathway Family Confidence Status Best Target
GhirA03G0021020.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00004__sp_O49499_CAMT4_ARATH
GhirA04G0015290.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirA04G0017650.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00003__sp_A0A0S2UWT1_CAMT2_PETHY
GhirA04G0017650.2 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirA04G0017660.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirA06G0007870.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirA06G0007870.2 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirA06G0007870.3 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirA08G0027760.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirA12G0002490.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirA12G0013070.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00003__sp_A0A0S2UWT1_CAMT2_PETHY
GhirA13G0004390.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirD04G0019430.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirD04G0022150.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00003__sp_A0A0S2UWT1_CAMT2_PETHY
GhirD04G0022180.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirD04G0022180.2 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirD04G0022190.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirD04G0022200.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirD06G0008100.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00002__sp_A0A0S2UWC9_CAMT1_PETHY
GhirD08G0029360.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirD12G0002580.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00003__sp_A0A0S2UWT1_CAMT2_PETHY
GhirD12G0002590.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY
GhirD12G0013810.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00003__sp_A0A0S2UWT1_CAMT2_PETHY
GhirD12G0013810.2 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00003__sp_A0A0S2UWT1_CAMT2_PETHY
GhirD13G0004720.1 Phenylpropanoid CCoAOMT medium pass CCoAOMT__00001__sp_A0A0S2UWA5_CAMT3_PETHY