PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
GhirA01G0006040.1 Alkaloid GS low borderline
GhirA02G0015680.1 Alkaloid GS high pass
GhirA02G0015680.2 Alkaloid GS high pass
GhirA02G0016510.1 Alkaloid GS high pass
GhirA02G0016510.2 Alkaloid GS high pass
GhirA02G0016530.1 Alkaloid GS high pass
GhirA03G0004880.1 Alkaloid GS low borderline
GhirA03G0004880.2 Alkaloid GS low borderline
GhirA03G0004880.3 Alkaloid GS low borderline
GhirA03G0015800.1 Alkaloid GS low borderline
GhirA03G0020790.1 Alkaloid GS high pass
GhirA05G0017450.1 Alkaloid GS low borderline
GhirA05G0019520.1 Alkaloid GS high pass
GhirA05G0029500.1 Alkaloid GS low borderline
GhirA05G0038860.1 Alkaloid GS low borderline
GhirA07G0005110.1 Alkaloid GS low borderline
GhirA07G0005120.1 Alkaloid GS low borderline
GhirA07G0010490.1 Alkaloid GS low borderline
GhirA07G0010510.1 Alkaloid GS low borderline
GhirA07G0010520.1 Alkaloid GS low borderline
GhirA07G0010520.2 Alkaloid GS low borderline
GhirA07G0010530.1 Alkaloid GS low borderline
GhirA07G0010560.1 Alkaloid GS low borderline
GhirA07G0022510.1 Alkaloid GS low borderline
GhirA07G0022520.1 Alkaloid GS low borderline
GhirA07G0022530.1 Alkaloid GS low borderline
GhirA07G0022540.1 Alkaloid GS low borderline
GhirA07G0024920.1 Alkaloid GS low borderline
GhirA07G0024920.2 Alkaloid GS low borderline
GhirA07G0024970.1 Alkaloid GS low borderline
GhirA09G0002980.1 Alkaloid GS low borderline
GhirA09G0002980.2 Alkaloid GS low borderline
GhirA09G0002980.3 Alkaloid GS low borderline
GhirA09G0004770.1 Alkaloid GS medium pass
GhirA10G0002270.1 Alkaloid GS low borderline
GhirA10G0015700.1 Alkaloid GS low borderline
GhirA10G0015700.2 Alkaloid GS low borderline
GhirA10G0017110.1 Alkaloid GS medium pass
GhirA11G0022470.1 Alkaloid GS medium pass
GhirA11G0022480.1 Alkaloid GS high pass
GhirA11G0022500.1 Alkaloid GS high pass
GhirA12G0002380.1 Alkaloid GS high pass
GhirA12G0009190.1 Alkaloid GS high pass
GhirA12G0009200.1 Alkaloid GS high pass
GhirA12G0009210.1 Alkaloid GS high pass
GhirA12G0026810.1 Alkaloid GS high pass
GhirA12G0026810.2 Alkaloid GS high pass
GhirA12G0026810.3 Alkaloid GS high pass
GhirA12G0026810.4 Alkaloid GS high pass
GhirA12G0026810.5 Alkaloid GS high pass