PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
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Gene Pathway Family Confidence Status
GhirA01G0006670.1 Flavonoid FNS medium borderline
GhirA01G0009290.1 Flavonoid FNS medium borderline
GhirA01G0009910.1 Flavonoid FNS medium borderline
GhirA02G0011040.1 Flavonoid FNS medium borderline
GhirA03G0002180.1 Flavonoid FNS medium borderline
GhirA03G0012130.1 Flavonoid FNS medium borderline
GhirA03G0013270.1 Flavonoid FNS low borderline
GhirA03G0013270.2 Flavonoid FNS low borderline
GhirA03G0017240.1 Flavonoid FNS medium borderline
GhirA03G0017240.2 Flavonoid FNS medium borderline
GhirA04G0006330.1 Flavonoid FNS medium borderline
GhirA05G0004340.1 Flavonoid FNS medium borderline
GhirA05G0021920.1 Flavonoid FNS medium borderline
GhirA05G0029720.1 Flavonoid FNS medium borderline
GhirA06G0011030.2 Flavonoid FNS low borderline
GhirA06G0011030.4 Flavonoid FNS low borderline
GhirA06G0011030.6 Flavonoid FNS low borderline
GhirA07G0009160.1 Flavonoid FNS medium borderline
GhirA07G0009160.2 Flavonoid FNS medium borderline
GhirA07G0010600.1 Flavonoid FNS medium borderline
GhirA07G0020410.1 Flavonoid FNS medium borderline
GhirA09G0014060.1 Flavonoid FNS medium borderline
GhirA09G0015410.1 Flavonoid FNS medium borderline
GhirA10G0006410.1 Flavonoid FNS low borderline
GhirA12G0003200.2 Flavonoid FNS medium borderline
GhirA12G0015600.1 Flavonoid FNS medium borderline
GhirA12G0026470.1 Flavonoid FNS medium borderline
GhirA13G0006290.1 Flavonoid FNS medium borderline
GhirA13G0008610.1 Flavonoid FNS medium borderline
GhirA13G0017200.1 Flavonoid FNS medium borderline
GhirD01G0009510.1 Flavonoid FNS medium borderline
GhirD01G0013290.1 Flavonoid FNS medium borderline
GhirD02G0020880.1 Flavonoid FNS medium borderline
GhirD03G0010050.1 Flavonoid FNS medium borderline
GhirD05G0004580.1 Flavonoid FNS medium borderline
GhirD06G0001270.1 Flavonoid FNS medium borderline
GhirD06G0001360.1 Flavonoid FNS medium borderline
GhirD06G0001380.1 Flavonoid FNS medium borderline
GhirD06G0011860.1 Flavonoid FNS low borderline
GhirD06G0011860.2 Flavonoid FNS low borderline
GhirD06G0017750.1 Flavonoid FNS medium borderline
GhirD07G0001410.1 Flavonoid FNS low borderline
GhirD07G0001410.2 Flavonoid FNS low borderline
GhirD07G0001410.3 Flavonoid FNS low borderline
GhirD07G0009440.1 Flavonoid FNS medium borderline
GhirD07G0010850.1 Flavonoid FNS medium borderline
GhirD07G0010870.1 Flavonoid FNS medium borderline
GhirD07G0015440.1 Flavonoid FNS low borderline
GhirD07G0021620.1 Flavonoid FNS medium borderline
GhirD09G0014370.1 Flavonoid FNS medium borderline