PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
GhirA01G0005690.1 Alkaloid T3O low borderline
GhirA01G0006650.1 Alkaloid T3O medium borderline
GhirA01G0006660.1 Alkaloid T3O medium borderline
GhirA01G0008230.1 Alkaloid T3O medium pass
GhirA01G0009180.1 Alkaloid T3O medium borderline
GhirA01G0009200.1 Alkaloid T3O medium borderline
GhirA01G0009220.1 Alkaloid T3O medium borderline
GhirA01G0009240.1 Alkaloid T3O medium borderline
GhirA01G0009260.1 Alkaloid T3O medium borderline
GhirA01G0009310.1 Alkaloid T3O medium borderline
GhirA01G0009320.1 Alkaloid T3O medium borderline
GhirA01G0012350.1 Alkaloid T3O medium borderline
GhirA01G0021400.1 Alkaloid T3O medium borderline
GhirA01G0021420.1 Alkaloid T3O medium borderline
GhirA01G0021660.1 Alkaloid T3O medium borderline
GhirA02G0000550.1 Alkaloid T3O medium borderline
GhirA02G0009370.1 Alkaloid T3O medium borderline
GhirA02G0009400.1 Alkaloid T3O medium borderline
GhirA02G0017450.1 Alkaloid T3O medium borderline
GhirA02G0017740.1 Alkaloid T3O medium borderline
GhirA02G0017770.1 Alkaloid T3O medium borderline
GhirA02G0018890.1 Alkaloid T3O medium pass
GhirA02G0018890.2 Alkaloid T3O medium pass
GhirA02G0018890.3 Alkaloid T3O medium pass
GhirA03G0002140.1 Alkaloid T3O medium borderline
GhirA03G0002150.1 Alkaloid T3O medium borderline
GhirA03G0002160.1 Alkaloid T3O medium borderline
GhirA03G0002170.1 Alkaloid T3O medium borderline
GhirA03G0002190.1 Alkaloid T3O medium borderline
GhirA03G0002490.1 Alkaloid T3O medium pass
GhirA03G0002500.1 Alkaloid T3O medium pass
GhirA03G0005890.1 Alkaloid T3O medium pass
GhirA03G0006890.1 Alkaloid T3O medium pass
GhirA03G0009430.1 Alkaloid T3O medium borderline
GhirA03G0014980.1 Alkaloid T3O low borderline
GhirA03G0015010.1 Alkaloid T3O medium borderline
GhirA03G0017280.1 Alkaloid T3O low borderline
GhirA03G0021100.1 Alkaloid T3O medium pass
GhirA03G0021100.2 Alkaloid T3O medium pass
GhirA04G0006310.1 Alkaloid T3O medium borderline
GhirA04G0006320.1 Alkaloid T3O medium borderline
GhirA04G0006340.1 Alkaloid T3O medium borderline
GhirA04G0006360.1 Alkaloid T3O medium borderline
GhirA04G0013590.1 Alkaloid T3O medium pass
GhirA04G0014650.1 Alkaloid T3O medium borderline
GhirA04G0016590.1 Alkaloid T3O medium borderline
GhirA05G0004340.1 Alkaloid T3O medium pass
GhirA05G0008720.1 Alkaloid T3O low borderline
GhirA05G0009430.1 Alkaloid T3O low borderline
GhirA05G0012170.1 Alkaloid T3O medium pass