PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: MVD
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Gene Pathway Family Confidence Status
GhirA05G0018610.1 Terpenoid MVD low borderline
GhirA06G0017300.1 Terpenoid MVD low borderline
GhirA06G0017300.2 Terpenoid MVD low borderline
GhirA12G0017420.1 Terpenoid MVD low borderline
GhirA13G0001080.1 Terpenoid MVD low borderline
GhirA13G0001080.2 Terpenoid MVD low borderline
GhirA13G0001190.1 Terpenoid MVD medium pass
GhirD01G0021650.1 Terpenoid MVD low borderline
GhirD05G0019220.1 Terpenoid MVD low borderline
GhirD05G0036230.1 Terpenoid MVD low borderline
GhirD06G0005040.1 Terpenoid MVD medium pass
GhirD06G0007890.1 Terpenoid MVD low borderline
GhirD06G0009060.1 Terpenoid MVD low borderline
GhirD06G0019080.1 Terpenoid MVD low borderline
GhirD06G0019080.2 Terpenoid MVD low borderline
GhirD07G0025680.1 Terpenoid MVD medium pass
GhirD10G0006960.1 Terpenoid MVD low borderline
GhirD10G0016270.1 Terpenoid MVD medium pass
GhirD10G0016270.2 Terpenoid MVD medium pass
GhirD10G0016270.3 Terpenoid MVD low borderline
GhirD10G0020540.1 Terpenoid MVD low borderline
GhirD10G0020540.10 Terpenoid MVD low borderline
GhirD10G0020540.11 Terpenoid MVD low borderline
GhirD10G0020540.12 Terpenoid MVD low borderline
GhirD10G0020540.13 Terpenoid MVD low borderline
GhirD10G0020540.2 Terpenoid MVD low borderline
GhirD10G0020540.3 Terpenoid MVD low borderline
GhirD10G0020540.4 Terpenoid MVD low borderline
GhirD10G0020540.5 Terpenoid MVD low borderline
GhirD10G0020540.6 Terpenoid MVD low borderline
GhirD10G0020540.7 Terpenoid MVD low borderline
GhirD10G0020540.8 Terpenoid MVD low borderline
GhirD10G0020540.9 Terpenoid MVD low borderline
GhirD11G0022780.1 Terpenoid MVD medium pass
GhirD13G0001260.1 Terpenoid MVD low borderline
GhirD13G0001320.1 Terpenoid MVD medium pass
GhirD13G0009160.1 Terpenoid MVD low borderline
GhirD13G0009160.2 Terpenoid MVD low borderline
GhirD13G0009160.3 Terpenoid MVD low borderline