PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirD11G0025390.1 Alkaloid 7DLH medium borderline
GhirD11G0039850.1 Alkaloid 7DLH medium borderline
GhirD12G0005890.1 Alkaloid 7DLH medium borderline
GhirD12G0011480.1 Alkaloid 7DLH medium borderline
GhirD12G0011480.2 Alkaloid 7DLH medium borderline
GhirD12G0026140.1 Alkaloid 7DLH medium borderline
GhirD12G0029190.1 Alkaloid 7DLH medium borderline
GhirD13G0004260.1 Alkaloid 7DLH medium borderline
GhirD13G0004280.1 Alkaloid 7DLH medium borderline
GhirD13G0004280.3 Alkaloid 7DLH medium borderline
GhirD13G0004280.5 Alkaloid 7DLH medium borderline
GhirD13G0004290.1 Alkaloid 7DLH medium borderline
GhirD13G0004290.2 Alkaloid 7DLH medium borderline
GhirD13G0004300.1 Alkaloid 7DLH medium borderline
GhirD13G0004310.1 Alkaloid 7DLH medium borderline
GhirD13G0004320.1 Alkaloid 7DLH medium borderline
GhirD13G0004320.2 Alkaloid 7DLH medium borderline
GhirD13G0007190.1 Alkaloid 7DLH low borderline
GhirD13G0007370.1 Alkaloid 7DLH medium borderline
GhirD13G0009900.1 Alkaloid 7DLH medium borderline
GhirD13G0009930.1 Alkaloid 7DLH medium borderline
GhirA01G0011340.1 Alkaloid 8HGO medium borderline
GhirA01G0020790.1 Alkaloid 8HGO medium borderline
GhirA02G0007560.1 Alkaloid 8HGO medium borderline
GhirA02G0007580.1 Alkaloid 8HGO medium pass
GhirA02G0007590.1 Alkaloid 8HGO medium pass
GhirA02G0007600.1 Alkaloid 8HGO medium borderline
GhirA02G0014400.1 Alkaloid 8HGO medium borderline
GhirA02G0014400.2 Alkaloid 8HGO medium borderline
GhirA04G0007890.1 Alkaloid 8HGO medium borderline
GhirA06G0003800.1 Alkaloid 8HGO medium borderline
GhirA06G0003810.1 Alkaloid 8HGO medium borderline
GhirA07G0017270.1 Alkaloid 8HGO medium borderline
GhirA07G0023090.1 Alkaloid 8HGO medium borderline
GhirA07G0023090.2 Alkaloid 8HGO medium borderline
GhirA08G0012430.1 Alkaloid 8HGO medium borderline
GhirA08G0012430.2 Alkaloid 8HGO medium borderline
GhirA08G0025630.1 Alkaloid 8HGO medium borderline
GhirA08G0025630.2 Alkaloid 8HGO medium borderline
GhirA10G0024050.1 Alkaloid 8HGO medium borderline
GhirA11G0006520.1 Alkaloid 8HGO medium borderline
GhirA11G0006530.1 Alkaloid 8HGO medium borderline
GhirD01G0011810.1 Alkaloid 8HGO medium borderline
GhirD01G0011810.2 Alkaloid 8HGO medium borderline
GhirD01G0022610.1 Alkaloid 8HGO medium borderline
GhirD02G0008500.1 Alkaloid 8HGO medium borderline
GhirD02G0008520.1 Alkaloid 8HGO medium borderline
GhirD02G0008560.1 Alkaloid 8HGO medium borderline
GhirD02G0008570.1 Alkaloid 8HGO medium borderline
GhirD03G0006150.1 Alkaloid 8HGO medium borderline