PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirD11G0011280.2 Phenylpropanoid LAC medium pass
GhirD11G0021220.1 Phenylpropanoid LAC medium pass
GhirD11G0021630.1 Phenylpropanoid LAC low borderline
GhirD11G0021630.2 Phenylpropanoid LAC low borderline
GhirD11G0021640.1 Phenylpropanoid LAC low borderline
GhirD11G0040290.1 Phenylpropanoid LAC medium pass
GhirD11G0040310.1 Phenylpropanoid LAC medium pass
GhirD11G0040460.1 Phenylpropanoid LAC medium pass
GhirD12G0010760.1 Phenylpropanoid LAC medium pass
GhirD12G0010770.1 Phenylpropanoid LAC low borderline
GhirD12G0013230.1 Phenylpropanoid LAC medium pass
GhirD12G0019980.1 Phenylpropanoid LAC low borderline
GhirD12G0019980.2 Phenylpropanoid LAC low borderline
GhirD13G0002250.1 Phenylpropanoid LAC medium pass
GhirD13G0002660.1 Phenylpropanoid LAC medium pass
GhirD13G0002670.1 Phenylpropanoid LAC medium pass
GhirD13G0002900.1 Phenylpropanoid LAC medium pass
GhirD13G0003730.1 Phenylpropanoid LAC medium pass
GhirD13G0003760.1 Phenylpropanoid LAC medium pass
GhirD13G0011010.1 Phenylpropanoid LAC medium pass
GhirD13G0025330.1 Phenylpropanoid LAC low borderline
GhirD13G0025340.1 Phenylpropanoid LAC low borderline
GhirD13G0025350.1 Phenylpropanoid LAC low borderline
GhirD13G0025360.1 Phenylpropanoid LAC low borderline
GhirD13G0025380.1 Phenylpropanoid LAC low borderline
GhirD13G0027410.1 Phenylpropanoid LAC medium pass
GhirA01G0023450.1 Phenylpropanoid PAL high pass
GhirA04G0009820.1 Phenylpropanoid PAL high pass
GhirA04G0009830.1 Phenylpropanoid PAL high pass
GhirA06G0008330.1 Phenylpropanoid PAL high pass
GhirA09G0016590.1 Phenylpropanoid PAL high pass
GhirA10G0022560.1 Phenylpropanoid PAL high pass
GhirA11G0031510.1 Phenylpropanoid PAL low borderline
GhirA11G0036440.1 Phenylpropanoid PAL high pass
GhirA11G0036440.2 Phenylpropanoid PAL high pass
GhirD01G0025110.1 Phenylpropanoid PAL high pass
GhirD04G0013670.1 Phenylpropanoid PAL high pass
GhirD04G0013680.1 Phenylpropanoid PAL high pass
GhirD06G0008590.1 Phenylpropanoid PAL high pass
GhirD09G0016860.1 Phenylpropanoid PAL high pass
GhirD10G0024730.1 Phenylpropanoid PAL high pass
GhirD11G0040000.1 Phenylpropanoid PAL high pass
GhirA01G0001330.1 Phenylpropanoid POD medium pass
GhirA01G0005760.1 Phenylpropanoid POD low borderline
GhirA01G0015490.1 Phenylpropanoid POD medium pass
GhirA01G0015500.1 Phenylpropanoid POD low borderline
GhirA01G0015550.1 Phenylpropanoid POD medium pass
GhirA01G0015550.2 Phenylpropanoid POD medium pass
GhirA01G0015800.1 Phenylpropanoid POD medium pass
GhirA01G0018250.1 Phenylpropanoid POD medium pass