PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirD10G0000790.1 Alkaloid BBE medium borderline
GhirD10G0000800.1 Alkaloid BBE medium borderline
GhirD10G0009190.1 Alkaloid BBE medium borderline
GhirD10G0012700.1 Alkaloid BBE medium borderline
GhirD10G0013490.1 Alkaloid BBE medium borderline
GhirD10G0015560.1 Alkaloid BBE medium borderline
GhirD11G0001070.1 Alkaloid BBE medium borderline
GhirD12G0029390.1 Alkaloid BBE medium borderline
GhirD12G0029400.1 Alkaloid BBE medium borderline
GhirD12G0029410.1 Alkaloid BBE medium borderline
GhirD13G0002260.1 Alkaloid BBE medium borderline
GhirD13G0002260.2 Alkaloid BBE medium borderline
GhirA01G0018950.1 Alkaloid CNMT low borderline
GhirA01G0018950.2 Alkaloid CNMT low borderline
GhirA01G0018990.1 Alkaloid CNMT low borderline
GhirA02G0004770.1 Alkaloid CNMT medium pass
GhirA02G0004790.1 Alkaloid CNMT medium pass
GhirA02G0018900.1 Alkaloid CNMT low borderline
GhirA04G0014980.1 Alkaloid CNMT low borderline
GhirA05G0004220.1 Alkaloid CNMT medium borderline
GhirA05G0004230.1 Alkaloid CNMT medium borderline
GhirA05G0004230.2 Alkaloid CNMT medium borderline
GhirA05G0043900.1 Alkaloid CNMT low borderline
GhirA05G0043900.2 Alkaloid CNMT low borderline
GhirA05G0043900.3 Alkaloid CNMT low borderline
GhirA07G0005580.1 Alkaloid CNMT low borderline
GhirA07G0008640.1 Alkaloid CNMT low borderline
GhirA09G0018270.1 Alkaloid CNMT low borderline
GhirA09G0018270.2 Alkaloid CNMT low borderline
GhirA09G0025480.2 Alkaloid CNMT low borderline
GhirA10G0017620.1 Alkaloid CNMT medium pass
GhirA11G0018140.1 Alkaloid CNMT low borderline
GhirA13G0008250.1 Alkaloid CNMT low borderline
GhirA13G0008250.2 Alkaloid CNMT low borderline
GhirD01G0020870.1 Alkaloid CNMT low borderline
GhirD01G0020870.2 Alkaloid CNMT low borderline
GhirD01G0020910.1 Alkaloid CNMT low borderline
GhirD02G0005550.1 Alkaloid CNMT low borderline
GhirD02G0005560.1 Alkaloid CNMT medium pass
GhirD03G0001230.1 Alkaloid CNMT low borderline
GhirD04G0001250.1 Alkaloid CNMT low borderline
GhirD04G0019130.1 Alkaloid CNMT low borderline
GhirD04G0019130.2 Alkaloid CNMT low borderline
GhirD05G0004410.1 Alkaloid CNMT medium borderline
GhirD05G0029260.1 Alkaloid CNMT low borderline
GhirD05G0029260.2 Alkaloid CNMT low borderline
GhirD05G0029260.3 Alkaloid CNMT low borderline
GhirD05G0029260.4 Alkaloid CNMT low borderline
GhirD07G0005760.1 Alkaloid CNMT low borderline
GhirD07G0008880.1 Alkaloid CNMT low borderline