PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirD13G0016300.1 Rosmarinic Acid C4H low borderline
GhirD13G0016310.1 Rosmarinic Acid C4H low borderline
GhirD13G0018790.1 Rosmarinic Acid C4H low borderline
GhirD13G0018850.1 Rosmarinic Acid C4H low borderline
GhirD13G0018860.1 Rosmarinic Acid C4H low borderline
GhirD13G0024170.1 Rosmarinic Acid C4H low borderline
GhirD13G0024180.1 Rosmarinic Acid C4H medium pass
GhirD13G0028310.1 Rosmarinic Acid C4H medium pass
Ghirscaffold_5210003460.1 Rosmarinic Acid C4H low borderline
GhirA01G0013290.1 Rosmarinic Acid CPR medium pass
GhirA01G0013290.2 Rosmarinic Acid CPR medium pass
GhirA01G0013290.3 Rosmarinic Acid CPR medium pass
GhirA01G0013290.4 Rosmarinic Acid CPR medium pass
GhirA05G0000570.1 Rosmarinic Acid CPR medium pass
GhirA05G0023220.1 Rosmarinic Acid CPR medium pass
GhirA05G0039020.1 Rosmarinic Acid CPR medium pass
GhirA07G0013260.1 Rosmarinic Acid CPR medium pass
GhirA07G0013260.2 Rosmarinic Acid CPR medium pass
GhirA08G0002330.1 Rosmarinic Acid CPR medium pass
GhirA08G0002340.1 Rosmarinic Acid CPR medium pass
GhirA08G0003190.1 Rosmarinic Acid CPR medium pass
GhirA09G0018400.1 Rosmarinic Acid CPR medium pass
GhirD01G0014430.1 Rosmarinic Acid CPR medium pass
GhirD01G0026590.1 Rosmarinic Acid CPR medium pass
GhirD01G0026620.1 Rosmarinic Acid CPR medium pass
GhirD04G0012220.1 Rosmarinic Acid CPR medium pass
GhirD04G0013540.1 Rosmarinic Acid CPR medium pass
GhirD05G0000580.1 Rosmarinic Acid CPR medium pass
GhirD05G0023950.1 Rosmarinic Acid CPR medium pass
GhirD07G0013580.1 Rosmarinic Acid CPR low borderline
GhirD08G0003240.1 Rosmarinic Acid CPR medium pass
GhirD08G0012250.1 Rosmarinic Acid CPR medium pass
GhirD09G0018720.1 Rosmarinic Acid CPR medium pass
GhirD10G0016020.1 Rosmarinic Acid CPR medium pass
GhirD11G0014290.1 Rosmarinic Acid CPR medium pass
GhirD11G0025840.1 Rosmarinic Acid CPR medium pass
GhirA03G0002240.1 Rosmarinic Acid HPPR medium pass
GhirA03G0002250.1 Rosmarinic Acid HPPR medium pass
GhirA05G0013710.1 Rosmarinic Acid HPPR medium pass
GhirA07G0016400.1 Rosmarinic Acid HPPR medium pass
GhirA09G0009120.1 Rosmarinic Acid HPPR medium pass
GhirA12G0024650.1 Rosmarinic Acid HPPR medium pass
GhirD03G0018150.1 Rosmarinic Acid HPPR medium pass
GhirD03G0018160.1 Rosmarinic Acid HPPR medium pass
GhirD05G0014060.1 Rosmarinic Acid HPPR medium pass
GhirD07G0017080.1 Rosmarinic Acid HPPR medium pass
GhirD07G0017080.2 Rosmarinic Acid HPPR medium pass
GhirD07G0017080.3 Rosmarinic Acid HPPR medium pass
GhirD07G0017080.4 Rosmarinic Acid HPPR medium pass
GhirD09G0009740.1 Rosmarinic Acid HPPR medium pass