PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirA07G0022520.1 Alkaloid GS low borderline
GhirA07G0022530.1 Alkaloid GS low borderline
GhirA07G0022540.1 Alkaloid GS low borderline
GhirA07G0024920.1 Alkaloid GS low borderline
GhirA07G0024920.2 Alkaloid GS low borderline
GhirA07G0024970.1 Alkaloid GS low borderline
GhirA09G0002980.1 Alkaloid GS low borderline
GhirA09G0002980.2 Alkaloid GS low borderline
GhirA09G0002980.3 Alkaloid GS low borderline
GhirA09G0004770.1 Alkaloid GS medium pass
GhirA10G0002270.1 Alkaloid GS low borderline
GhirA10G0015700.1 Alkaloid GS low borderline
GhirA10G0015700.2 Alkaloid GS low borderline
GhirA10G0017110.1 Alkaloid GS medium pass
GhirA11G0022470.1 Alkaloid GS medium pass
GhirA11G0022480.1 Alkaloid GS high pass
GhirA11G0022500.1 Alkaloid GS high pass
GhirA12G0002380.1 Alkaloid GS high pass
GhirA12G0009190.1 Alkaloid GS high pass
GhirA12G0009200.1 Alkaloid GS high pass
GhirA12G0009210.1 Alkaloid GS high pass
GhirA12G0026810.1 Alkaloid GS high pass
GhirA12G0026810.2 Alkaloid GS high pass
GhirA12G0026810.3 Alkaloid GS high pass
GhirA12G0026810.4 Alkaloid GS high pass
GhirA12G0026810.5 Alkaloid GS high pass
GhirA12G0028710.1 Alkaloid GS medium pass
GhirA12G0028720.1 Alkaloid GS medium pass
GhirA12G0028740.1 Alkaloid GS medium pass
GhirA13G0000910.1 Alkaloid GS low borderline
GhirD01G0006130.1 Alkaloid GS low borderline
GhirD01G0006130.2 Alkaloid GS low borderline
GhirD01G0006130.3 Alkaloid GS low borderline
GhirD02G0019300.1 Alkaloid GS low borderline
GhirD02G0024710.1 Alkaloid GS medium pass
GhirD03G0003800.1 Alkaloid GS high pass
GhirD03G0003800.2 Alkaloid GS high pass
GhirD03G0003820.1 Alkaloid GS high pass
GhirD03G0005430.1 Alkaloid GS high pass
GhirD03G0015550.1 Alkaloid GS low borderline
GhirD04G0006590.1 Alkaloid GS low borderline
GhirD04G0010590.1 Alkaloid GS low borderline
GhirD04G0010780.1 Alkaloid GS low borderline
GhirD05G0018070.1 Alkaloid GS low borderline
GhirD05G0018080.1 Alkaloid GS low borderline
GhirD05G0020140.1 Alkaloid GS high pass
GhirD05G0030390.1 Alkaloid GS low borderline
GhirD06G0003870.1 Alkaloid GS low borderline
GhirD06G0009880.3 Alkaloid GS low borderline
GhirD07G0005310.1 Alkaloid GS low borderline