PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirD10G0019740.2 Alkaloid NMT medium pass
GhirD10G0023070.2 Alkaloid NMT medium borderline
GhirD10G0023890.1 Alkaloid NMT medium pass
GhirD11G0011340.1 Alkaloid NMT medium pass
GhirD11G0015090.1 Alkaloid NMT low borderline
GhirD11G0015090.2 Alkaloid NMT low borderline
GhirD11G0015200.1 Alkaloid NMT medium pass
GhirD11G0015950.1 Alkaloid NMT medium pass
GhirD11G0017220.1 Alkaloid NMT medium pass
GhirD11G0022190.1 Alkaloid NMT medium pass
GhirD11G0022190.2 Alkaloid NMT medium pass
GhirD11G0025890.1 Alkaloid NMT medium pass
GhirD11G0027110.1 Alkaloid NMT medium pass
GhirD11G0028060.1 Alkaloid NMT medium pass
GhirD11G0037170.1 Alkaloid NMT medium pass
GhirD12G0006870.1 Alkaloid NMT medium borderline
GhirD12G0006870.2 Alkaloid NMT medium borderline
GhirD12G0013080.1 Alkaloid NMT low borderline
GhirD12G0013080.2 Alkaloid NMT low borderline
GhirD12G0013660.1 Alkaloid NMT medium borderline
GhirD12G0014480.1 Alkaloid NMT medium pass
GhirD12G0014480.2 Alkaloid NMT medium pass
GhirD12G0017610.1 Alkaloid NMT low borderline
GhirD12G0017610.2 Alkaloid NMT low borderline
GhirD12G0022290.1 Alkaloid NMT low borderline
GhirD12G0024490.1 Alkaloid NMT medium pass
GhirD12G0027530.1 Alkaloid NMT medium borderline
GhirD12G0027550.1 Alkaloid NMT medium borderline
GhirD12G0028400.1 Alkaloid NMT low borderline
GhirD12G0028400.2 Alkaloid NMT low borderline
GhirD12G0030550.1 Alkaloid NMT medium borderline
GhirD13G0000410.1 Alkaloid NMT medium pass
GhirD13G0000410.2 Alkaloid NMT medium pass
GhirD13G0006960.1 Alkaloid NMT medium pass
GhirD13G0006960.2 Alkaloid NMT medium borderline
GhirD13G0006960.3 Alkaloid NMT medium borderline
GhirD13G0012670.1 Alkaloid NMT medium pass
GhirD13G0019120.1 Alkaloid NMT medium borderline
GhirD13G0024920.1 Alkaloid NMT low borderline
GhirD13G0025710.1 Alkaloid NMT medium borderline
GhirA03G0006030.1 Alkaloid ODC low borderline
GhirA11G0027990.1 Alkaloid ODC medium pass
GhirA11G0028000.1 Alkaloid ODC medium pass
GhirD11G0029910.1 Alkaloid ODC medium pass
GhirD11G0029920.1 Alkaloid ODC medium pass
GhirA03G0007090.1 Alkaloid PMT low borderline
GhirA03G0007090.2 Alkaloid PMT low borderline
GhirA03G0015940.1 Alkaloid PMT medium borderline
GhirA05G0005760.1 Alkaloid PMT low borderline
GhirA05G0012450.1 Alkaloid PMT low borderline