PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirD08G0004870.1 Flavonoid 4CL medium pass
GhirD08G0018810.1 Flavonoid 4CL medium pass
GhirD08G0021880.1 Flavonoid 4CL medium pass
GhirD09G0006850.1 Flavonoid 4CL low borderline
GhirD09G0007880.1 Flavonoid 4CL medium pass
GhirD09G0016540.1 Flavonoid 4CL medium pass
GhirD09G0016540.2 Flavonoid 4CL medium pass
GhirD09G0022700.1 Flavonoid 4CL medium pass
GhirD09G0027650.1 Flavonoid 4CL medium pass
GhirD10G0005580.1 Flavonoid 4CL medium pass
GhirD10G0007710.1 Flavonoid 4CL low borderline
GhirD10G0007710.2 Flavonoid 4CL medium pass
GhirD10G0015730.1 Flavonoid 4CL low borderline
GhirD10G0015730.2 Flavonoid 4CL low borderline
GhirD10G0015730.3 Flavonoid 4CL low borderline
GhirD10G0016570.1 Flavonoid 4CL medium pass
GhirD10G0020600.1 Flavonoid 4CL medium pass
GhirD11G0002680.1 Flavonoid 4CL low borderline
GhirD11G0002680.2 Flavonoid 4CL low borderline
GhirD11G0002680.3 Flavonoid 4CL low borderline
GhirD11G0004320.1 Flavonoid 4CL medium pass
GhirD11G0019440.1 Flavonoid 4CL medium pass
GhirD11G0035790.1 Flavonoid 4CL low borderline
GhirD12G0017220.1 Flavonoid 4CL medium pass
GhirD12G0026800.1 Flavonoid 4CL low borderline
GhirD13G0010560.1 Flavonoid 4CL low borderline
GhirD13G0021430.1 Flavonoid 4CL medium pass
GhirD13G0028050.1 Flavonoid 4CL medium pass
GhirA01G0007650.1 Flavonoid ANR medium borderline
GhirA01G0007650.2 Flavonoid ANR medium borderline
GhirA01G0007650.3 Flavonoid ANR medium borderline
GhirA01G0007650.4 Flavonoid ANR medium borderline
GhirA01G0007650.5 Flavonoid ANR medium borderline
GhirA01G0021730.1 Flavonoid ANR medium borderline
GhirA02G0014530.1 Flavonoid ANR medium borderline
GhirA02G0014910.1 Flavonoid ANR medium borderline
GhirA05G0004500.1 Flavonoid ANR medium borderline
GhirA05G0007340.1 Flavonoid ANR medium borderline
GhirA05G0017740.1 Flavonoid ANR medium borderline
GhirA05G0020350.1 Flavonoid ANR medium borderline
GhirA05G0021360.1 Flavonoid ANR medium borderline
GhirA05G0021360.2 Flavonoid ANR medium borderline
GhirA05G0029390.1 Flavonoid ANR medium borderline
GhirA05G0038790.1 Flavonoid ANR low borderline
GhirA05G0038790.2 Flavonoid ANR low borderline
GhirA06G0000880.1 Flavonoid ANR medium borderline
GhirA06G0008980.1 Flavonoid ANR low borderline
GhirA06G0008980.2 Flavonoid ANR low borderline
GhirA06G0019080.1 Flavonoid ANR low borderline
GhirA06G0019100.1 Flavonoid ANR low borderline