PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirA02G0002760.1 Alkaloid 7DLH medium borderline
GhirA02G0002770.1 Alkaloid 7DLH medium borderline
GhirA02G0002790.1 Alkaloid 7DLH medium borderline
GhirA02G0002800.1 Alkaloid 7DLH medium borderline
GhirA02G0002810.1 Alkaloid 7DLH medium pass
GhirA02G0002820.1 Alkaloid 7DLH medium borderline
GhirA02G0002830.1 Alkaloid 7DLH medium borderline
GhirA02G0002840.1 Alkaloid 7DLH medium borderline
GhirA02G0002860.1 Alkaloid 7DLH medium borderline
GhirA02G0002870.1 Alkaloid 7DLH medium borderline
GhirA02G0002880.1 Alkaloid 7DLH medium borderline
GhirA02G0002880.2 Alkaloid 7DLH medium borderline
GhirA02G0002890.1 Alkaloid 7DLH medium borderline
GhirA02G0002900.1 Alkaloid 7DLH medium borderline
GhirA02G0002910.1 Alkaloid 7DLH medium borderline
GhirA02G0007410.1 Alkaloid 7DLH low borderline
GhirA03G0002500.2 Alkaloid 7DLH low borderline
GhirA03G0006500.1 Alkaloid 7DLH medium borderline
GhirA04G0008470.1 Alkaloid 7DLH medium borderline
GhirA04G0018340.1 Alkaloid 7DLH medium borderline
GhirA04G0018350.1 Alkaloid 7DLH medium borderline
GhirA05G0003460.1 Alkaloid 7DLH medium borderline
GhirA05G0006620.1 Alkaloid 7DLH medium borderline
GhirA05G0020670.1 Alkaloid 7DLH medium borderline
GhirA05G0020670.2 Alkaloid 7DLH medium borderline
GhirA05G0020680.1 Alkaloid 7DLH medium borderline
GhirA07G0011720.1 Alkaloid 7DLH medium borderline
GhirA07G0020500.1 Alkaloid 7DLH medium borderline
GhirA08G0015090.1 Alkaloid 7DLH medium borderline
GhirA08G0020430.1 Alkaloid 7DLH medium borderline
GhirA08G0026510.1 Alkaloid 7DLH medium borderline
GhirA08G0026510.2 Alkaloid 7DLH medium borderline
GhirA09G0004460.1 Alkaloid 7DLH medium borderline
GhirA09G0019950.1 Alkaloid 7DLH medium borderline
GhirA10G0013850.1 Alkaloid 7DLH medium borderline
GhirA10G0013870.1 Alkaloid 7DLH medium borderline
GhirA11G0017720.1 Alkaloid 7DLH medium borderline
GhirA11G0023900.1 Alkaloid 7DLH medium borderline
GhirA11G0036310.1 Alkaloid 7DLH medium borderline
GhirA12G0005930.1 Alkaloid 7DLH medium borderline
GhirA12G0010950.1 Alkaloid 7DLH medium borderline
GhirA12G0025370.1 Alkaloid 7DLH medium borderline
GhirA12G0025370.2 Alkaloid 7DLH medium borderline
GhirA13G0004050.1 Alkaloid 7DLH medium borderline
GhirA13G0004070.1 Alkaloid 7DLH medium borderline
GhirA13G0004090.1 Alkaloid 7DLH medium borderline
GhirA13G0006290.1 Alkaloid 7DLH medium borderline
GhirA13G0006330.1 Alkaloid 7DLH medium borderline
GhirA13G0006330.2 Alkaloid 7DLH medium borderline
GhirA13G0006330.3 Alkaloid 7DLH medium borderline