PlantSME Plant secondary metabolism enzyme database

Hygroamblystegium varium (hygroamblystegium_varium)

Imported from atlas release summary for Hygroamblystegium varium.

1693
Candidate Protein Records
1226
Pathway-Level Records
2943
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 26.67% Terpenoid pathway 24.06% Alkaloid pathway 18.35% Flavonoid pathway 13.21% Rosmarinic acid pathway 10.28% Steroid pathway 7.42%
Family Distribution
BAHD 6.35% POD 6.29% 4CL 5.61% C4H 5.54% C3'H/CYP98A 4.55% CYP76 3.7% NMT 3.67% PAL 2.85%
Other Families 61.43%
More Families (96)
STR 78 2.65% IFS 78 2.65% IFR 74 2.51% F3H 74 2.51% UGT 63 2.14% GS 61 2.07% BR6OX2/CYP85A2 56 1.9% T3O 55 1.87% UFGT 53 1.8% PYKS 52 1.77% 7DLGT 51 1.73% DWF4/CYP90B1 51 1.73% F3'H/CYP75B 50 1.7% CODM/T6ODM 49 1.66% CAD 41 1.39% CAS 41 1.39% TRI/TRII 40 1.36% H6H 39 1.33% IO 37 1.26% SMT1/SMT2/SMT3 37 1.26% CYP71 33 1.12% CHS 31 1.05% COMT 27 0.92% CSE 23 0.78% NCS 22 0.75% 8HGO 21 0.71% F3'5'H/CYP75A 21 0.71% HCT 19 0.65% SLS 18 0.61% G8O/G8H 17 0.58% RAS 17 0.58% LAMT 16 0.54% TPS 16 0.54% CYP90D1 15 0.51% BBE 14 0.48% COR 14 0.48% 7DLH 14 0.48% CNMT 14 0.48% SGD 14 0.48% CPR 13 0.44% SQS/FDFT1 13 0.44% 16OMT 12 0.41% T16H 12 0.41% GES 12 0.41% LAC 12 0.41% CCR 12 0.41% GGPPS 12 0.41% ANR 11 0.37% FNS 11 0.37% CPD/CYP90A1 11 0.37% PMT 10 0.34% CYP80B1 10 0.34% TDC 10 0.34% DWF5 10 0.34% ROT3/CYP90C1 9 0.31% AACT 9 0.31% CHI 8 0.27% TAT 8 0.27% CYP719 7 0.24% ANS/LDOX 7 0.24% DFR 7 0.24% BR6OX1/CYP85A1 7 0.24% SMO1/SMO2 7 0.24% FPPS 7 0.24% HDS/IspG 7 0.24% MPO 6 0.2% F5H/CYP84A 6 0.2% DET2 6 0.2% 6OMT_4OMT_SOMT 5 0.17% TYDC_DDC 5 0.17% CCoAOMT 5 0.17% MVK 5 0.17% HDR/IspH 5 0.17% MVD 5 0.17% ISY 4 0.14% ADC 4 0.14% FLS 4 0.14% HMGR 4 0.14% PMK 4 0.14% MCT/IspD 4 0.14% HPPR 3 0.1% HYD1 3 0.1% CYP51G1 3 0.1% DWF1 3 0.1% SQE 3 0.1% HMGS 3 0.1% DWF7 2 0.07% CPI1 2 0.07% FK 2 0.07% MDS/IspF 2 0.07% CMK/IspE 2 0.07% DXR 2 0.07% IDI 2 0.07% DXS 2 0.07% CYP80F1 1 0.03% XMT_MXMT_DXMT 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 327 11 POD (177) View species results
Terpenoid pathway 295 20 BAHD (119) View species results
Alkaloid pathway 225 20 NMT (45) View species results
Flavonoid pathway 162 9 UFGT (49) View species results
Rosmarinic acid pathway 126 7 C4H (40) View species results
Steroid pathway 91 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 917 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status Best Target
HvarHygva27710369890 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
HvarHygva27970371920 Rosmarinic Acid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
HvarHygva280372480 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
HvarHygva28880379760 Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
HvarHygva30110391980 Rosmarinic Acid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
HvarHygva30460395140 Rosmarinic Acid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
HvarHygva3720411260 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
HvarHygva5480428920 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
HvarHygva660441010 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
HvarHygva7000445400 Rosmarinic Acid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
HvarHygva7710451720 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
HvarHygva7710451730 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
HvarHygva8260456730 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
HvarHygva8720461400 Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
HvarHygva950469510 Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY