PlantSME Plant secondary metabolism enzyme database

Hygroamblystegium varium (hygroamblystegium_varium)

Imported from atlas release summary for Hygroamblystegium varium.

1226
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 327 11 POD (177) View species results
Terpenoid pathway 295 20 BAHD (119) View species results
Alkaloid pathway 225 20 NMT (45) View species results
Flavonoid pathway 162 9 UFGT (49) View species results
Rosmarinic acid pathway 126 7 C4H (40) View species results
Steroid pathway 91 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 917 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
HvarHygva1050005200 Alkaloid PYKS low borderline
HvarHygva10740007200 Alkaloid PYKS high pass
HvarHygva10930008940 Alkaloid PYKS high pass
HvarHygva11010009800 Alkaloid PYKS medium pass
HvarHygva11630015810 Alkaloid PYKS high pass
HvarHygva12440023480 Alkaloid PYKS high pass
HvarHygva1400840042830 Alkaloid PYKS high pass
HvarHygva1438670048330 Alkaloid PYKS high pass
HvarHygva1463680052470 Alkaloid PYKS high pass
HvarHygva1473540054920 Alkaloid PYKS low borderline
HvarHygva1496130060570 Alkaloid PYKS medium pass
HvarHygva1512040065760 Alkaloid PYKS medium pass
HvarHygva1525250070700 Alkaloid PYKS low borderline
HvarHygva1530073000 Alkaloid PYKS low borderline
HvarHygva1538760078340 Alkaloid PYKS high pass
HvarHygva1552260094480 Alkaloid PYKS high pass
HvarHygva1559120106250 Alkaloid PYKS high pass
HvarHygva1561020110170 Alkaloid PYKS high pass
HvarHygva1561230111260 Alkaloid PYKS high pass
HvarHygva1562790114720 Alkaloid PYKS low borderline
HvarHygva1566890127390 Alkaloid PYKS medium pass
HvarHygva1567320129420 Alkaloid PYKS low borderline
HvarHygva1567400129810 Alkaloid PYKS high pass
HvarHygva1567910131010 Alkaloid PYKS high pass
HvarHygva1572900147980 Alkaloid PYKS high pass
HvarHygva1573790151520 Alkaloid PYKS high pass
HvarHygva1575020154860 Alkaloid PYKS low borderline
HvarHygva1575780157970 Alkaloid PYKS low borderline
HvarHygva1576550160350 Alkaloid PYKS high pass
HvarHygva1576550160370 Alkaloid PYKS medium pass
HvarHygva1578290166260 Alkaloid PYKS medium pass
HvarHygva1578400166780 Alkaloid PYKS high pass
HvarHygva1582920181620 Alkaloid PYKS low borderline
HvarHygva1585740191160 Alkaloid PYKS high pass
HvarHygva15860192340 Alkaloid PYKS medium pass
HvarHygva1628500214180 Alkaloid PYKS low borderline
HvarHygva1628510214210 Alkaloid PYKS low borderline
HvarHygva1708820224360 Alkaloid PYKS low borderline
HvarHygva1708830224410 Alkaloid PYKS low borderline
HvarHygva17750273580 Alkaloid PYKS high pass
HvarHygva20300299860 Alkaloid PYKS low borderline
HvarHygva20620303360 Alkaloid PYKS low borderline
HvarHygva21900314200 Alkaloid PYKS high pass
HvarHygva24440337260 Alkaloid PYKS low borderline
HvarHygva28350376010 Alkaloid PYKS low borderline
HvarHygva29770388470 Alkaloid PYKS low borderline
HvarHygva30770398800 Alkaloid PYKS high pass
HvarHygva31050402300 Alkaloid PYKS low borderline
HvarHygva4080414560 Alkaloid PYKS low borderline
HvarHygva6170436300 Alkaloid PYKS low borderline