PlantSME Plant secondary metabolism enzyme database

Hygroamblystegium varium (hygroamblystegium_varium)

Imported from atlas release summary for Hygroamblystegium varium.

1226
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 327 11 POD (177) View species results
Terpenoid pathway 295 20 BAHD (119) View species results
Alkaloid pathway 225 20 NMT (45) View species results
Flavonoid pathway 162 9 UFGT (49) View species results
Rosmarinic acid pathway 126 7 C4H (40) View species results
Steroid pathway 91 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 917 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
HvarHygva20550302500 Phenylpropanoid CSE medium pass
HvarHygva21130307690 Phenylpropanoid CSE medium pass
HvarHygva22400317730 Phenylpropanoid CSE medium pass
HvarHygva22400317740 Phenylpropanoid CSE medium pass
HvarHygva25490347680 Phenylpropanoid CSE medium pass
HvarHygva26150354030 Phenylpropanoid CSE medium pass
HvarHygva27130363910 Phenylpropanoid CSE low borderline
HvarHygva280372350 Phenylpropanoid CSE medium pass
HvarHygva2830375430 Phenylpropanoid CSE low borderline
HvarHygva7720451810 Phenylpropanoid CSE medium pass
HvarHygva9020464680 Phenylpropanoid CSE medium pass
HvarHygva9820472870 Phenylpropanoid CSE low borderline
HvarHygva9880473430 Phenylpropanoid CSE medium pass
HvarHygva12310021500 Phenylpropanoid F5H/CYP84A medium borderline
HvarHygva1470053540 Phenylpropanoid F5H/CYP84A medium borderline
HvarHygva1490058530 Phenylpropanoid F5H/CYP84A medium borderline
HvarHygva1546280086540 Phenylpropanoid F5H/CYP84A medium borderline
HvarHygva1571670143180 Phenylpropanoid F5H/CYP84A medium borderline
HvarHygva1586820195140 Phenylpropanoid F5H/CYP84A medium borderline
HvarHygva10060000610 Phenylpropanoid HCT medium pass
HvarHygva10920008870 Phenylpropanoid HCT medium pass
HvarHygva11480013600 Phenylpropanoid HCT medium pass
HvarHygva11480013640 Phenylpropanoid HCT medium pass
HvarHygva14300046400 Phenylpropanoid HCT low borderline
HvarHygva15230069750 Phenylpropanoid HCT medium pass
HvarHygva1528170071860 Phenylpropanoid HCT medium pass
HvarHygva1530280073380 Phenylpropanoid HCT medium pass
HvarHygva1539910079370 Phenylpropanoid HCT medium pass
HvarHygva1561590112040 Phenylpropanoid HCT low borderline
HvarHygva15630115210 Phenylpropanoid HCT medium pass
HvarHygva1650216580 Phenylpropanoid HCT low borderline
HvarHygva1760050260530 Phenylpropanoid HCT medium pass
HvarHygva1760060260630 Phenylpropanoid HCT medium pass
HvarHygva22030315400 Phenylpropanoid HCT medium pass
HvarHygva23060323870 Phenylpropanoid HCT low borderline
HvarHygva23060323890 Phenylpropanoid HCT low borderline
HvarHygva25320345910 Phenylpropanoid HCT low borderline
HvarHygva26830360840 Phenylpropanoid HCT medium pass
HvarHygva12540025000 Phenylpropanoid LAC medium pass
HvarHygva1566640126270 Phenylpropanoid LAC medium pass
HvarHygva1581660177490 Phenylpropanoid LAC medium pass
HvarHygva1582840181380 Phenylpropanoid LAC medium pass
HvarHygva21280308760 Phenylpropanoid LAC medium pass
HvarHygva21280308800 Phenylpropanoid LAC medium pass
HvarHygva22070315730 Phenylpropanoid LAC low borderline
HvarHygva24660339310 Phenylpropanoid LAC medium pass
HvarHygva25250345220 Phenylpropanoid LAC low borderline
HvarHygva4690420920 Phenylpropanoid LAC medium pass
HvarHygva980472670 Phenylpropanoid LAC medium pass
HvarHygva980472680 Phenylpropanoid LAC medium pass