PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Protein/Isoform Record Pathway Family Confidence Status
ocimum_basilicum_384399.g92.t1 Flavonoid F3H medium borderline
ocimum_basilicum_384407.g17.t1 Flavonoid F3H medium borderline
ocimum_basilicum_384460.g33.t1 Flavonoid F3H medium borderline
ocimum_basilicum_384807.g11.t1 Flavonoid F3H low borderline
ocimum_basilicum_384900.g11.t1 Flavonoid F3H medium borderline
ocimum_basilicum_384900.g12.t1 Flavonoid F3H medium borderline
ocimum_basilicum_384900.g14.t1 Flavonoid F3H medium borderline
ocimum_basilicum_384900.g55.t1 Flavonoid F3H medium borderline
ocimum_basilicum_384900.g8.t1 Flavonoid F3H medium borderline
ocimum_basilicum_384929.g191.t1 Flavonoid F3H medium borderline
ocimum_basilicum_384929.g193.t1 Flavonoid F3H medium borderline
ocimum_basilicum_384929.g195.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385027.g39.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385214.g51.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385239.g52.t1 Flavonoid F3H medium pass
ocimum_basilicum_385405.g6.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385590.g48.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385603.g24.t1 Flavonoid F3H medium pass
ocimum_basilicum_385603.g26.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385637.g24.t1 Flavonoid F3H medium pass
ocimum_basilicum_385708.g30.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385803.g82.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385803.g83.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385803.g84.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385855.g27.t1 Flavonoid F3H low borderline
ocimum_basilicum_385855.g28.t1 Flavonoid F3H low borderline
ocimum_basilicum_385855.g31.t1 Flavonoid F3H low borderline
ocimum_basilicum_385855.g33.t1 Flavonoid F3H low borderline
ocimum_basilicum_385855.g37.t1 Flavonoid F3H medium pass
ocimum_basilicum_385855.g41.t1 Flavonoid F3H medium pass
ocimum_basilicum_385882.g59.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385882.g62.t1 Flavonoid F3H medium borderline
ocimum_basilicum_385938.g100.t1 Flavonoid F3H low borderline
ocimum_basilicum_385938.g175.t1 Flavonoid F3H medium borderline
ocimum_basilicum_386068.g21.t1 Flavonoid F3H low borderline
ocimum_basilicum_386072.g137.t1 Flavonoid F3H low borderline
ocimum_basilicum_386163.g123.t1 Flavonoid F3H medium borderline
ocimum_basilicum_410736.g2.t1 Flavonoid F3H low borderline
ocimum_basilicum_410737.g2.t1 Flavonoid F3H low borderline
ocimum_basilicum_448.g155.t1 Flavonoid F3H low borderline
ocimum_basilicum_452.g78.t1 Flavonoid F3H medium borderline
ocimum_basilicum_468.g100.t1 Flavonoid F3H medium borderline
ocimum_basilicum_469.g63.t1 Flavonoid F3H medium borderline
ocimum_basilicum_469.g67.t1 Flavonoid F3H medium borderline
ocimum_basilicum_469.g68.t1 Flavonoid F3H medium borderline
ocimum_basilicum_469.g71.t1 Flavonoid F3H medium borderline
ocimum_basilicum_469.g72.t1 Flavonoid F3H medium borderline
ocimum_basilicum_469.g73.t1 Flavonoid F3H medium borderline
ocimum_basilicum_473734.g5.t1 Flavonoid F3H medium borderline
ocimum_basilicum_481.g99.t1 Flavonoid F3H medium borderline