PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ocimum_basilicum_749.g31.t1 Terpenoid CYP76 low borderline
ocimum_basilicum_749.g32.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_749.g35.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_749.g38.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_749.g40.t1 Terpenoid CYP76 medium pass
ocimum_basilicum_749.g45.t1 Terpenoid CYP76 low borderline
ocimum_basilicum_749.g48.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_755.g39.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_755.g41.t1 Terpenoid CYP76 low borderline
ocimum_basilicum_755.g42.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_755.g43.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_755.g45.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_755.g46.t1 Terpenoid CYP76 medium pass
ocimum_basilicum_755.g49.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_757.g75.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_799.g2.t1 Terpenoid CYP76 low borderline
ocimum_basilicum_844.g1.t1 Terpenoid CYP76 medium pass
ocimum_basilicum_888.g17.t1 Terpenoid CYP76 low borderline
ocimum_basilicum_899.g111.t1 Terpenoid CYP76 low borderline
ocimum_basilicum_935.g186.t1 Terpenoid CYP76 medium pass
ocimum_basilicum_935.g187.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_935.g189.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_935.g190.t1 Terpenoid CYP76 medium borderline
ocimum_basilicum_957.g14.t1 Terpenoid CYP76 medium pass
ocimum_basilicum_1597.g49.t1 Terpenoid DXR low borderline
ocimum_basilicum_355437.g2.t1 Terpenoid DXR low borderline
ocimum_basilicum_369706.g5.t1 Terpenoid DXR low borderline
ocimum_basilicum_375368.g1.t1 Terpenoid DXR medium pass
ocimum_basilicum_383283.g29.t1 Terpenoid DXR low borderline
ocimum_basilicum_383283.g31.t1 Terpenoid DXR high pass
ocimum_basilicum_383292.g28.t1 Terpenoid DXR low borderline
ocimum_basilicum_383577.g21.t1 Terpenoid DXR high pass
ocimum_basilicum_385016.g21.t1 Terpenoid DXR medium pass
ocimum_basilicum_385214.g110.t1 Terpenoid DXR low borderline
ocimum_basilicum_468.g11.t1 Terpenoid DXR medium pass
ocimum_basilicum_549.g76.t1 Terpenoid DXR low borderline
ocimum_basilicum_1925.g112.t1 Terpenoid DXS medium pass
ocimum_basilicum_385149.g5.t1 Terpenoid DXS medium pass
ocimum_basilicum_386050.g119.t1 Terpenoid DXS medium pass
ocimum_basilicum_503.g41.t1 Terpenoid DXS medium pass
ocimum_basilicum_523.g90.t1 Terpenoid DXS medium pass
ocimum_basilicum_540.g102.t1 Terpenoid DXS medium pass
ocimum_basilicum_547.g333.t1 Terpenoid DXS medium pass
ocimum_basilicum_556.g208.t1 Terpenoid DXS medium pass
ocimum_basilicum_667.g41.t1 Terpenoid DXS medium pass
ocimum_basilicum_733.g53.t1 Terpenoid DXS medium pass
ocimum_basilicum_751.g63.t1 Terpenoid DXS medium pass
ocimum_basilicum_1095.g11.t1 Terpenoid FPPS medium pass
ocimum_basilicum_1432.g3.t1 Terpenoid FPPS medium pass
ocimum_basilicum_1786.g5.t1 Terpenoid FPPS medium borderline