PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ocimum_basilicum_371653.g4.t1 Terpenoid FPPS medium borderline
ocimum_basilicum_373.g224.t1 Terpenoid FPPS medium pass
ocimum_basilicum_373.g225.t1 Terpenoid FPPS medium pass
ocimum_basilicum_374.g139.t1 Terpenoid FPPS medium pass
ocimum_basilicum_375.g53.t1 Terpenoid FPPS medium pass
ocimum_basilicum_375.g54.t1 Terpenoid FPPS medium pass
ocimum_basilicum_383582.g1.t1 Terpenoid FPPS medium pass
ocimum_basilicum_383685.g147.t1 Terpenoid FPPS medium pass
ocimum_basilicum_384069.g6.t1 Terpenoid FPPS medium pass
ocimum_basilicum_454.g75.t1 Terpenoid FPPS medium borderline
ocimum_basilicum_539.g118.t1 Terpenoid FPPS medium pass
ocimum_basilicum_549.g365.t1 Terpenoid FPPS medium pass
ocimum_basilicum_549.g366.t1 Terpenoid FPPS medium pass
ocimum_basilicum_550.g29.t1 Terpenoid FPPS medium pass
ocimum_basilicum_680.g29.t1 Terpenoid FPPS medium pass
ocimum_basilicum_701.g78.t1 Terpenoid FPPS medium pass
ocimum_basilicum_726.g2.t1 Terpenoid FPPS medium pass
ocimum_basilicum_726.g99.t1 Terpenoid FPPS low borderline
ocimum_basilicum_1117.g3.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_1892.g14.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_308.g111.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_376563.g7.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_381014.g8.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_381642.g1.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_382438.g38.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_383226.g32.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_383331.g5.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_384260.g6.t1 Terpenoid GGPPS low borderline
ocimum_basilicum_385835.g63.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_385960.g47.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_454.g101.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_456.g58.t1 Terpenoid GGPPS medium borderline
ocimum_basilicum_510.g34.t1 Terpenoid GPPS medium borderline
ocimum_basilicum_1717.g15.t1 Terpenoid HDR/IspH high pass
ocimum_basilicum_1717.g16.t1 Terpenoid HDR/IspH high pass
ocimum_basilicum_1717.g17.t1 Terpenoid HDR/IspH low borderline
ocimum_basilicum_1717.g18.t1 Terpenoid HDR/IspH high pass
ocimum_basilicum_382764.g24.t1 Terpenoid HDR/IspH medium pass
ocimum_basilicum_382790.g42.t1 Terpenoid HDR/IspH high pass
ocimum_basilicum_382790.g43.t1 Terpenoid HDR/IspH high pass
ocimum_basilicum_385488.g29.t1 Terpenoid HDR/IspH high pass
ocimum_basilicum_385488.g33.t1 Terpenoid HDR/IspH high pass
ocimum_basilicum_714.g91.t1 Terpenoid HDR/IspH high pass
ocimum_basilicum_714.g92.t1 Terpenoid HDR/IspH high pass
ocimum_basilicum_714.g93.t1 Terpenoid HDR/IspH medium pass
ocimum_basilicum_507.g169.t1 Terpenoid HDS/IspG high pass
ocimum_basilicum_798.g8.t1 Terpenoid HDS/IspG high pass
ocimum_basilicum_923.g3.t1 Terpenoid HDS/IspG medium pass
ocimum_basilicum_146.g1.t1 Terpenoid HMGR medium pass
ocimum_basilicum_147.g1.t1 Terpenoid HMGR medium pass