PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ocimum_basilicum_1555.g5.t1 Terpenoid HMGR medium pass
ocimum_basilicum_1555.g6.t1 Terpenoid HMGR medium pass
ocimum_basilicum_1568.g62.t1 Terpenoid HMGR medium pass
ocimum_basilicum_1846.g15.t1 Terpenoid HMGR medium pass
ocimum_basilicum_1846.g16.t1 Terpenoid HMGR medium pass
ocimum_basilicum_1934.g86.t1 Terpenoid HMGR medium pass
ocimum_basilicum_1972.g32.t1 Terpenoid HMGR medium pass
ocimum_basilicum_383113.g1.t1 Terpenoid HMGR low borderline
ocimum_basilicum_385365.g10.t1 Terpenoid HMGR medium pass
ocimum_basilicum_447.g103.t1 Terpenoid HMGR low borderline
ocimum_basilicum_486.g71.t1 Terpenoid HMGR medium pass
ocimum_basilicum_486.g72.t1 Terpenoid HMGR medium pass
ocimum_basilicum_725.g13.t1 Terpenoid HMGR low borderline
ocimum_basilicum_748.g96.t1 Terpenoid HMGR medium pass
ocimum_basilicum_1617.g1.t1 Terpenoid HMGS high pass
ocimum_basilicum_1787.g1.t1 Terpenoid HMGS high pass
ocimum_basilicum_1787.g4.t1 Terpenoid HMGS high pass
ocimum_basilicum_687.g79.t1 Terpenoid HMGS low borderline
ocimum_basilicum_729.g13.t1 Terpenoid HMGS low borderline
ocimum_basilicum_1633.g19.t1 Terpenoid IDI medium pass
ocimum_basilicum_379260.g19.t1 Terpenoid IDI medium pass
ocimum_basilicum_381080.g1.t1 Terpenoid IDI low borderline
ocimum_basilicum_384655.g8.t1 Terpenoid IDI medium pass
ocimum_basilicum_385159.g2.t1 Terpenoid IDI medium pass
ocimum_basilicum_385692.g14.t1 Terpenoid IDI medium pass
ocimum_basilicum_814.g2.t1 Terpenoid IDI medium pass
ocimum_basilicum_373160.g3.t1 Terpenoid MCT/IspD high pass
ocimum_basilicum_377244.g8.t1 Terpenoid MCT/IspD high pass
ocimum_basilicum_366092.g1.t1 Terpenoid MDS/IspF high pass
ocimum_basilicum_380513.g12.t1 Terpenoid MDS/IspF high pass
ocimum_basilicum_1609.g7.t1 Terpenoid MVD low borderline
ocimum_basilicum_1974.g49.t1 Terpenoid MVD medium pass
ocimum_basilicum_355055.g1.t1 Terpenoid MVD low borderline
ocimum_basilicum_381302.g31.t1 Terpenoid MVD low borderline
ocimum_basilicum_381302.g36.t1 Terpenoid MVD medium pass
ocimum_basilicum_381804.g1.t1 Terpenoid MVD low borderline
ocimum_basilicum_383331.g61.t1 Terpenoid MVD low borderline
ocimum_basilicum_385960.g1.t1 Terpenoid MVD low borderline
ocimum_basilicum_518.g53.t1 Terpenoid MVD low borderline
ocimum_basilicum_684.g25.t1 Terpenoid MVD low borderline
ocimum_basilicum_708.g26.t1 Terpenoid MVD medium pass
ocimum_basilicum_1869.g20.t1 Terpenoid MVK low borderline
ocimum_basilicum_1965.g69.t1 Terpenoid MVK low borderline
ocimum_basilicum_376424.g5.t1 Terpenoid MVK low borderline
ocimum_basilicum_377071.g3.t1 Terpenoid MVK low borderline
ocimum_basilicum_382931.g21.t1 Terpenoid MVK low borderline
ocimum_basilicum_383577.g71.t1 Terpenoid MVK low borderline
ocimum_basilicum_383975.g40.t1 Terpenoid MVK medium pass
ocimum_basilicum_384478.g13.t1 Terpenoid MVK medium pass
ocimum_basilicum_385170.g29.t1 Terpenoid MVK low borderline