PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2741
Candidate Protein Records
2290
Pathway-Level Records
5669
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status
Osat02G0006180.1 Rosmarinic Acid 4CL medium pass
Osat02G0021890.1 Rosmarinic Acid 4CL low borderline
Osat02G0021890.2 Rosmarinic Acid 4CL low borderline
Osat02G0033290.1 Rosmarinic Acid 4CL medium pass
Osat03G0002440.1 Rosmarinic Acid 4CL medium pass
Osat03G0002620.1 Rosmarinic Acid 4CL medium pass
Osat03G0002730.1 Rosmarinic Acid 4CL medium pass
Osat03G0002740.1 Rosmarinic Acid 4CL medium pass
Osat03G0004170.1 Rosmarinic Acid 4CL medium pass
Osat03G0015330.1 Rosmarinic Acid 4CL medium pass
Osat03G0015340.1 Rosmarinic Acid 4CL medium pass
Osat03G0045060.1 Rosmarinic Acid 4CL low borderline
Osat03G0045060.2 Rosmarinic Acid 4CL low borderline
Osat04G0010930.1 Rosmarinic Acid 4CL medium pass
Osat04G0010930.2 Rosmarinic Acid 4CL medium pass
Osat04G0016490.1 Rosmarinic Acid 4CL low borderline
Osat04G0036050.1 Rosmarinic Acid 4CL medium pass
Osat04G0036780.1 Rosmarinic Acid 4CL medium pass
Osat05G0002600.1 Rosmarinic Acid 4CL low borderline
Osat05G0002600.2 Rosmarinic Acid 4CL low borderline
Osat05G0002600.3 Rosmarinic Acid 4CL low borderline
Osat05G0002600.4 Rosmarinic Acid 4CL low borderline
Osat05G0013920.1 Rosmarinic Acid 4CL low borderline
Osat05G0013920.2 Rosmarinic Acid 4CL low borderline
Osat06G0004380.1 Rosmarinic Acid 4CL low borderline
Osat06G0004380.2 Rosmarinic Acid 4CL low borderline
Osat06G0029130.1 Rosmarinic Acid 4CL medium pass
Osat06G0029130.2 Rosmarinic Acid 4CL medium pass
Osat07G0012220.1 Rosmarinic Acid 4CL medium pass
Osat07G0012220.2 Rosmarinic Acid 4CL medium pass
Osat07G0029010.1 Rosmarinic Acid 4CL medium pass
Osat08G0002260.1 Rosmarinic Acid 4CL low borderline
Osat08G0003160.1 Rosmarinic Acid 4CL medium pass
Osat08G0009600.1 Rosmarinic Acid 4CL medium pass
Osat08G0021360.1 Rosmarinic Acid 4CL medium pass
Osat09G0011010.1 Rosmarinic Acid 4CL low borderline
Osat09G0011010.3 Rosmarinic Acid 4CL low borderline
Osat09G0011010.4 Rosmarinic Acid 4CL low borderline
Osat09G0023260.1 Rosmarinic Acid 4CL medium pass
Osat10G0024770.1 Rosmarinic Acid 4CL medium pass
Osat11G0003460.1 Rosmarinic Acid 4CL low borderline
Osat11G0003460.2 Rosmarinic Acid 4CL low borderline
Osat11G0020670.1 Rosmarinic Acid 4CL low borderline
Osat11G0021280.1 Rosmarinic Acid 4CL low borderline
Osat11G0021280.2 Rosmarinic Acid 4CL low borderline
Osat11G0021280.3 Rosmarinic Acid 4CL low borderline
Osat11G0021280.4 Rosmarinic Acid 4CL low borderline
Osat12G0003310.1 Rosmarinic Acid 4CL low borderline
Osat12G0003310.2 Rosmarinic Acid 4CL low borderline
Osat12G0003310.3 Rosmarinic Acid 4CL low borderline