PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ANR
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Gene Pathway Family Confidence Status
Osat01G0002150.1 Flavonoid ANR medium borderline
Osat01G0022180.1 Flavonoid ANR medium borderline
Osat01G0022180.2 Flavonoid ANR medium borderline
Osat01G0022180.3 Flavonoid ANR medium borderline
Osat01G0029270.1 Flavonoid ANR low borderline
Osat01G0042430.1 Flavonoid ANR medium borderline
Osat01G0053440.1 Flavonoid ANR low borderline
Osat03G0006600.1 Flavonoid ANR low borderline
Osat03G0022230.1 Flavonoid ANR low borderline
Osat03G0022230.2 Flavonoid ANR low borderline
Osat03G0042900.1 Flavonoid ANR low borderline
Osat03G0042970.1 Flavonoid ANR medium borderline
Osat04G0032640.1 Flavonoid ANR medium borderline
Osat04G0032640.2 Flavonoid ANR medium borderline
Osat04G0032650.1 Flavonoid ANR medium borderline
Osat04G0032660.1 Flavonoid ANR medium borderline
Osat04G0032670.1 Flavonoid ANR medium borderline
Osat04G0032690.1 Flavonoid ANR medium borderline
Osat04G0032700.1 Flavonoid ANR medium borderline
Osat04G0032710.1 Flavonoid ANR medium borderline
Osat05G0032130.1 Flavonoid ANR low borderline
Osat06G0026920.1 Flavonoid ANR medium borderline
Osat06G0028780.1 Flavonoid ANR medium borderline
Osat06G0028790.1 Flavonoid ANR medium borderline
Osat06G0031070.1 Flavonoid ANR medium borderline
Osat07G0025880.1 Flavonoid ANR medium borderline
Osat07G0026120.1 Flavonoid ANR medium borderline
Osat07G0026120.2 Flavonoid ANR medium borderline
Osat07G0026130.1 Flavonoid ANR medium borderline
Osat07G0026170.1 Flavonoid ANR medium borderline
Osat07G0026180.1 Flavonoid ANR medium borderline
Osat07G0026190.1 Flavonoid ANR low borderline
Osat08G0005910.1 Flavonoid ANR medium borderline
Osat08G0011570.1 Flavonoid ANR medium borderline
Osat08G0020960.1 Flavonoid ANR medium borderline
Osat09G0013510.1 Flavonoid ANR medium borderline
Osat09G0013510.2 Flavonoid ANR medium borderline
Osat09G0013510.3 Flavonoid ANR medium borderline
Osat09G0018560.1 Flavonoid ANR medium borderline
Osat09G0018570.1 Flavonoid ANR low borderline
Osat09G0018580.1 Flavonoid ANR medium borderline
Osat09G0018590.1 Flavonoid ANR medium borderline
Osat09G0018590.2 Flavonoid ANR medium borderline
Osat09G0018600.1 Flavonoid ANR medium borderline
Osat09G0018610.1 Flavonoid ANR medium borderline
Osat09G0018610.2 Flavonoid ANR medium borderline
Osat09G0018610.3 Flavonoid ANR medium borderline
Osat09G0018610.4 Flavonoid ANR medium borderline
Osat10G0017450.1 Flavonoid ANR medium borderline
Osat10G0024600.1 Flavonoid ANR low borderline