PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.86% Alkaloid pathway 23.19% Phenylpropanoid pathway 20.17% Flavonoid pathway 13.84% Steroid pathway 7.86% Rosmarinic acid pathway 7.07%
Family Distribution
C4H 6.02% C3'H/CYP98A 5.91% BAHD 5.84% POD 4.43% UGT 4.23% 7DLGT 3.79% UFGT 3.69% 4CL 3.6%
Other Families 62.5%
More Families (97)
IFS 202 3.56% T3O 201 3.55% CYP76 163 2.88% F3'H/CYP75B 130 2.29% DWF4/CYP90B1 130 2.29% F3H 122 2.15% BR6OX2/CYP85A2 115 2.03% NMT 111 1.96% SMT1/SMT2/SMT3 111 1.96% CYP71 105 1.85% STR 84 1.48% CAD 83 1.46% TRI/TRII 82 1.45% SGD 74 1.31% CAS 73 1.29% TPS 71 1.25% PYKS 65 1.15% H6H 63 1.11% GES 59 1.04% G8O/G8H 56 0.99% CODM/T6ODM 55 0.97% IFR 54 0.95% CCR 53 0.93% ANR 52 0.92% CSE 51 0.9% SLS 49 0.86% COMT 49 0.86% PMT 47 0.83% FNS 44 0.78% RAS 44 0.78% HCT 42 0.74% LAC 40 0.71% T16H 39 0.69% PAL 39 0.69% CYP90D1 39 0.69% NCS 37 0.65% GS 35 0.62% CHS 35 0.62% 16OMT 34 0.6% CPD/CYP90A1 31 0.55% 8HGO 29 0.51% CYP51G1 29 0.51% IO 28 0.49% DFR 27 0.48% F3'5'H/CYP75A 26 0.46% BR6OX1/CYP85A1 26 0.46% COR 24 0.42% F5H/CYP84A 24 0.42% LAMT 22 0.39% BBE 20 0.35% CNMT 18 0.32% TAT 18 0.32% FPPS 16 0.28% XMT_MXMT_DXMT 15 0.26% ANS/LDOX 15 0.26% ROT3/CYP90C1 14 0.25% 7DLH 13 0.23% CYP719 11 0.19% CCoAOMT 11 0.19% SQS/FDFT1 11 0.19% GGPPS 11 0.19% CYP80B1 9 0.16% CPR 9 0.16% TYDC_DDC 8 0.14% MPO 8 0.14% ADC 8 0.14% HPPR 8 0.14% SMO1/SMO2 8 0.14% AACT 8 0.14% CHI 7 0.12% SQE 7 0.12% MCT/IspD 7 0.12% DXS 7 0.12% FK 6 0.11% DWF1 6 0.11% MVD 6 0.11% MVK 6 0.11% FLS 5 0.09% HMGR 5 0.09% CYP80F1 4 0.07% ODC 3 0.05% TDC 3 0.05% ISY 3 0.05% DWF7 3 0.05% HMGS 3 0.05% 6OMT_4OMT_SOMT 2 0.04% DET2 2 0.04% DXR 2 0.04% CMK/IspE 2 0.04% MDS/IspF 2 0.04% HDR/IspH 2 0.04% IDI 2 0.04% HYD1 1 0.02% DWF5 1 0.02% CPI1 1 0.02% HDS/IspG 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status Best Target
Osat10G0020900.1 Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Osat10G0020900.2 Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Osat11G0012540.1 Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Osat11G0016410.1 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
Osat11G0016530.1 Terpenoid CYP76 medium borderline CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
Osat11G0017570.1 Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Osat11G0019220.1 Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
Osat12G0006800.1 Terpenoid CYP76 medium pass CYP76__00007__sp_A0A1D8QMD2_C76K7_ROSOF
Osat12G0007030.1 Terpenoid CYP76 medium borderline CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
Osat12G0010820.1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Osat12G0023260.1 Terpenoid CYP76 medium pass CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
Osat12G0023270.1 Terpenoid CYP76 medium pass CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
Osat12G0023320.1 Terpenoid CYP76 medium pass CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU