PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Osat03G0003240.1 Steroid DWF4/CYP90B1 low borderline
Osat03G0011240.1 Steroid DWF4/CYP90B1 low borderline
Osat03G0019610.1 Steroid DWF4/CYP90B1 low borderline
Osat03G0019960.1 Steroid DWF4/CYP90B1 low borderline
Osat03G0019970.1 Steroid DWF4/CYP90B1 low borderline
Osat03G0019970.2 Steroid DWF4/CYP90B1 low borderline
Osat03G0025530.1 Steroid DWF4/CYP90B1 low borderline
Osat03G0027220.1 Steroid DWF4/CYP90B1 low borderline
Osat03G0027270.1 Steroid DWF4/CYP90B1 low borderline
Osat03G0031160.1 Steroid DWF4/CYP90B1 medium borderline
Osat03G0031160.2 Steroid DWF4/CYP90B1 medium borderline
Osat03G0038500.1 Steroid DWF4/CYP90B1 low borderline
Osat03G0038520.1 Steroid DWF4/CYP90B1 low borderline
Osat04G0002200.1 Steroid DWF4/CYP90B1 low borderline
Osat04G0004240.1 Steroid DWF4/CYP90B1 low borderline
Osat04G0004360.1 Steroid DWF4/CYP90B1 low borderline
Osat04G0008200.1 Steroid DWF4/CYP90B1 low borderline
Osat04G0016670.1 Steroid DWF4/CYP90B1 low borderline
Osat04G0020950.2 Steroid DWF4/CYP90B1 medium borderline
Osat04G0021750.1 Steroid DWF4/CYP90B1 low borderline
Osat04G0021760.1 Steroid DWF4/CYP90B1 low borderline
Osat05G0017290.1 Steroid DWF4/CYP90B1 low borderline
Osat05G0017870.1 Steroid DWF4/CYP90B1 low borderline
Osat05G0019450.1 Steroid DWF4/CYP90B1 low borderline
Osat05G0020620.1 Steroid DWF4/CYP90B1 low borderline
Osat05G0024690.1 Steroid DWF4/CYP90B1 low borderline
Osat06G0000140.1 Steroid DWF4/CYP90B1 low borderline
Osat06G0002210.2 Steroid DWF4/CYP90B1 low borderline
Osat06G0006830.1 Steroid DWF4/CYP90B1 low borderline
Osat06G0006840.1 Steroid DWF4/CYP90B1 low borderline
Osat06G0007690.1 Steroid DWF4/CYP90B1 low borderline
Osat06G0023580.1 Steroid DWF4/CYP90B1 low borderline
Osat06G0023650.1 Steroid DWF4/CYP90B1 low borderline
Osat06G0023660.1 Steroid DWF4/CYP90B1 low borderline
Osat06G0023660.2 Steroid DWF4/CYP90B1 low borderline
Osat06G0023660.3 Steroid DWF4/CYP90B1 low borderline
Osat06G0028050.1 Steroid DWF4/CYP90B1 low borderline
Osat06G0028080.1 Steroid DWF4/CYP90B1 low borderline
Osat06G0028120.1 Steroid DWF4/CYP90B1 low borderline
Osat06G0030240.1 Steroid DWF4/CYP90B1 low borderline
Osat07G0014220.1 Steroid DWF4/CYP90B1 low borderline
Osat07G0020170.2 Steroid DWF4/CYP90B1 medium borderline
Osat07G0028660.1 Steroid DWF4/CYP90B1 low borderline
Osat07G0028680.1 Steroid DWF4/CYP90B1 low borderline
Osat07G0028690.1 Steroid DWF4/CYP90B1 low borderline
Osat08G0010800.1 Steroid DWF4/CYP90B1 low borderline
Osat08G0021980.1 Steroid DWF4/CYP90B1 medium borderline
Osat08G0023030.1 Steroid DWF4/CYP90B1 medium borderline
Osat09G0012460.1 Steroid DWF4/CYP90B1 low borderline
Osat09G0021210.1 Steroid DWF4/CYP90B1 low borderline