PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Osat09G0021510.1 Steroid DWF4/CYP90B1 low borderline
Osat10G0002570.1 Steroid DWF4/CYP90B1 low borderline
Osat10G0002870.1 Steroid DWF4/CYP90B1 low borderline
Osat10G0004450.1 Steroid DWF4/CYP90B1 low borderline
Osat10G0004830.1 Steroid DWF4/CYP90B1 low borderline
Osat10G0006220.1 Steroid DWF4/CYP90B1 low borderline
Osat10G0007220.1 Steroid DWF4/CYP90B1 low borderline
Osat10G0008190.1 Steroid DWF4/CYP90B1 low borderline
Osat10G0010950.1 Steroid DWF4/CYP90B1 medium borderline
Osat10G0015210.1 Steroid DWF4/CYP90B1 low borderline
Osat10G0020900.1 Steroid DWF4/CYP90B1 low borderline
Osat10G0020900.2 Steroid DWF4/CYP90B1 low borderline
Osat11G0001450.1 Steroid DWF4/CYP90B1 low borderline
Osat11G0002780.1 Steroid DWF4/CYP90B1 low borderline
Osat11G0002800.1 Steroid DWF4/CYP90B1 low borderline
Osat11G0003810.1 Steroid DWF4/CYP90B1 low borderline
Osat11G0016530.1 Steroid DWF4/CYP90B1 low borderline
Osat11G0025820.1 Steroid DWF4/CYP90B1 low borderline
Osat11G0025830.1 Steroid DWF4/CYP90B1 low borderline
Osat12G0001440.1 Steroid DWF4/CYP90B1 medium borderline
Osat12G0002600.1 Steroid DWF4/CYP90B1 low borderline
Osat12G0002610.1 Steroid DWF4/CYP90B1 low borderline
Osat12G0003710.1 Steroid DWF4/CYP90B1 low borderline
Osat12G0006800.1 Steroid DWF4/CYP90B1 low borderline
Osat12G0007030.1 Steroid DWF4/CYP90B1 low borderline
Osat12G0010820.1 Steroid DWF4/CYP90B1 low borderline
Osat12G0018560.1 Steroid DWF4/CYP90B1 low borderline
Osat12G0023260.1 Steroid DWF4/CYP90B1 low borderline
Osat12G0023270.1 Steroid DWF4/CYP90B1 low borderline
Osat12G0023320.1 Steroid DWF4/CYP90B1 low borderline