PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Osat01G0005950.1 Flavonoid F3H medium borderline
Osat01G0006840.1 Flavonoid F3H low borderline
Osat01G0006840.2 Flavonoid F3H low borderline
Osat01G0006840.3 Flavonoid F3H low borderline
Osat01G0017730.1 Flavonoid F3H medium borderline
Osat01G0017730.2 Flavonoid F3H medium borderline
Osat01G0017740.1 Flavonoid F3H medium borderline
Osat01G0018980.1 Flavonoid F3H medium borderline
Osat01G0025390.1 Flavonoid F3H medium borderline
Osat01G0036470.1 Flavonoid F3H low borderline
Osat01G0037390.1 Flavonoid F3H medium borderline
Osat01G0042770.1 Flavonoid F3H medium borderline
Osat01G0042770.2 Flavonoid F3H medium borderline
Osat01G0042770.3 Flavonoid F3H medium borderline
Osat01G0042770.4 Flavonoid F3H medium borderline
Osat01G0046510.1 Flavonoid F3H medium borderline
Osat01G0050250.1 Flavonoid F3H medium borderline
Osat02G0013410.1 Flavonoid F3H medium borderline
Osat02G0013410.2 Flavonoid F3H medium borderline
Osat02G0013410.3 Flavonoid F3H medium borderline
Osat02G0013410.4 Flavonoid F3H medium borderline
Osat02G0013410.5 Flavonoid F3H medium borderline
Osat02G0013410.6 Flavonoid F3H medium borderline
Osat02G0015850.1 Flavonoid F3H medium borderline
Osat02G0038450.1 Flavonoid F3H medium borderline
Osat02G0038760.1 Flavonoid F3H medium borderline
Osat02G0038760.2 Flavonoid F3H medium borderline
Osat02G0038760.3 Flavonoid F3H medium borderline
Osat03G0001790.1 Flavonoid F3H medium borderline
Osat03G0001790.2 Flavonoid F3H medium borderline
Osat03G0001790.3 Flavonoid F3H medium borderline
Osat03G0001790.4 Flavonoid F3H medium borderline
Osat03G0001790.5 Flavonoid F3H medium borderline
Osat03G0014270.1 Flavonoid F3H medium borderline
Osat03G0014270.2 Flavonoid F3H medium borderline
Osat03G0024360.1 Flavonoid F3H medium borderline
Osat03G0028700.1 Flavonoid F3H medium borderline
Osat03G0033430.1 Flavonoid F3H medium borderline
Osat03G0045890.1 Flavonoid F3H medium borderline
Osat03G0045950.1 Flavonoid F3H medium pass
Osat03G0046180.1 Flavonoid F3H medium borderline
Osat04G0004530.1 Flavonoid F3H medium borderline
Osat04G0016660.1 Flavonoid F3H low borderline
Osat04G0021350.1 Flavonoid F3H medium pass
Osat04G0024810.1 Flavonoid F3H medium borderline
Osat04G0028900.1 Flavonoid F3H medium borderline
Osat04G0028910.1 Flavonoid F3H medium borderline
Osat04G0033630.1 Flavonoid F3H medium borderline
Osat04G0035000.1 Flavonoid F3H medium borderline
Osat04G0035400.1 Flavonoid F3H medium borderline