PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Osat04G0035400.2 Flavonoid F3H medium borderline
Osat04G0035420.1 Flavonoid F3H medium borderline
Osat05G0002220.1 Flavonoid F3H medium borderline
Osat05G0003800.1 Flavonoid F3H medium borderline
Osat05G0003810.1 Flavonoid F3H medium borderline
Osat05G0004620.1 Flavonoid F3H low borderline
Osat05G0005890.1 Flavonoid F3H medium borderline
Osat05G0008040.1 Flavonoid F3H low borderline
Osat05G0008040.2 Flavonoid F3H low borderline
Osat05G0010960.1 Flavonoid F3H low borderline
Osat05G0020470.1 Flavonoid F3H medium borderline
Osat05G0020470.2 Flavonoid F3H medium pass
Osat05G0027060.1 Flavonoid F3H medium borderline
Osat05G0030730.1 Flavonoid F3H medium borderline
Osat06G0004730.1 Flavonoid F3H medium borderline
Osat06G0005680.1 Flavonoid F3H low borderline
Osat06G0005690.1 Flavonoid F3H medium borderline
Osat06G0005700.1 Flavonoid F3H medium borderline
Osat06G0005700.2 Flavonoid F3H medium borderline
Osat06G0005710.1 Flavonoid F3H medium pass
Osat06G0005770.1 Flavonoid F3H low borderline
Osat06G0005780.1 Flavonoid F3H low borderline
Osat06G0005790.1 Flavonoid F3H medium borderline
Osat06G0005800.1 Flavonoid F3H medium pass
Osat06G0005810.1 Flavonoid F3H medium borderline
Osat06G0011250.1 Flavonoid F3H medium borderline
Osat06G0011260.1 Flavonoid F3H medium borderline
Osat06G0023830.1 Flavonoid F3H medium borderline
Osat06G0027190.1 Flavonoid F3H medium borderline
Osat07G0000290.1 Flavonoid F3H low borderline
Osat07G0005220.2 Flavonoid F3H low borderline
Osat07G0005230.1 Flavonoid F3H medium pass
Osat08G0017800.1 Flavonoid F3H medium borderline
Osat08G0017830.1 Flavonoid F3H medium borderline
Osat08G0017860.1 Flavonoid F3H medium borderline
Osat08G0017880.1 Flavonoid F3H medium borderline
Osat08G0023500.1 Flavonoid F3H medium borderline
Osat08G0023500.2 Flavonoid F3H medium borderline
Osat08G0029550.1 Flavonoid F3H medium borderline
Osat09G0002470.1 Flavonoid F3H low borderline
Osat09G0002470.2 Flavonoid F3H low borderline
Osat09G0009240.1 Flavonoid F3H medium borderline
Osat09G0009260.1 Flavonoid F3H medium borderline
Osat09G0009280.1 Flavonoid F3H low borderline
Osat09G0015680.1 Flavonoid F3H medium borderline
Osat09G0015720.1 Flavonoid F3H medium borderline
Osat09G0024550.1 Flavonoid F3H medium borderline
Osat10G0020730.1 Flavonoid F3H low borderline
Osat10G0020730.2 Flavonoid F3H low borderline
Osat10G0020730.3 Flavonoid F3H low borderline