PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.86% Alkaloid pathway 23.19% Phenylpropanoid pathway 20.17% Flavonoid pathway 13.84% Steroid pathway 7.86% Rosmarinic acid pathway 7.07%
Family Distribution
C4H 6.02% C3'H/CYP98A 5.91% BAHD 5.84% POD 4.43% UGT 4.23% 7DLGT 3.79% UFGT 3.69% 4CL 3.6%
Other Families 62.5%
More Families (97)
IFS 202 3.56% T3O 201 3.55% CYP76 163 2.88% F3'H/CYP75B 130 2.29% DWF4/CYP90B1 130 2.29% F3H 122 2.15% BR6OX2/CYP85A2 115 2.03% NMT 111 1.96% SMT1/SMT2/SMT3 111 1.96% CYP71 105 1.85% STR 84 1.48% CAD 83 1.46% TRI/TRII 82 1.45% SGD 74 1.31% CAS 73 1.29% TPS 71 1.25% PYKS 65 1.15% H6H 63 1.11% GES 59 1.04% G8O/G8H 56 0.99% CODM/T6ODM 55 0.97% IFR 54 0.95% CCR 53 0.93% ANR 52 0.92% CSE 51 0.9% SLS 49 0.86% COMT 49 0.86% PMT 47 0.83% FNS 44 0.78% RAS 44 0.78% HCT 42 0.74% LAC 40 0.71% T16H 39 0.69% PAL 39 0.69% CYP90D1 39 0.69% NCS 37 0.65% GS 35 0.62% CHS 35 0.62% 16OMT 34 0.6% CPD/CYP90A1 31 0.55% 8HGO 29 0.51% CYP51G1 29 0.51% IO 28 0.49% DFR 27 0.48% F3'5'H/CYP75A 26 0.46% BR6OX1/CYP85A1 26 0.46% COR 24 0.42% F5H/CYP84A 24 0.42% LAMT 22 0.39% BBE 20 0.35% CNMT 18 0.32% TAT 18 0.32% FPPS 16 0.28% XMT_MXMT_DXMT 15 0.26% ANS/LDOX 15 0.26% ROT3/CYP90C1 14 0.25% 7DLH 13 0.23% CYP719 11 0.19% CCoAOMT 11 0.19% SQS/FDFT1 11 0.19% GGPPS 11 0.19% CYP80B1 9 0.16% CPR 9 0.16% TYDC_DDC 8 0.14% MPO 8 0.14% ADC 8 0.14% HPPR 8 0.14% SMO1/SMO2 8 0.14% AACT 8 0.14% CHI 7 0.12% SQE 7 0.12% MCT/IspD 7 0.12% DXS 7 0.12% FK 6 0.11% DWF1 6 0.11% MVD 6 0.11% MVK 6 0.11% FLS 5 0.09% HMGR 5 0.09% CYP80F1 4 0.07% ODC 3 0.05% TDC 3 0.05% ISY 3 0.05% DWF7 3 0.05% HMGS 3 0.05% 6OMT_4OMT_SOMT 2 0.04% DET2 2 0.04% DXR 2 0.04% CMK/IspE 2 0.04% MDS/IspF 2 0.04% HDR/IspH 2 0.04% IDI 2 0.04% HYD1 1 0.02% DWF5 1 0.02% CPI1 1 0.02% HDS/IspG 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Osat09G0023350.1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Osat10G0004940.1 Alkaloid NMT medium borderline NMT__00043__sp_Q8H0D2_DXMT1_COFAR
Osat10G0018280.1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Osat11G0002220.1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Osat11G0010980.1 Alkaloid NMT medium borderline NMT__00010__sp_A4GE70_DXMT1_COFCA
Osat11G0023860.1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Osat12G0007010.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
Osat12G0007120.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
Osat12G0007130.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
Osat12G0009440.1 Alkaloid NMT medium pass NMT__00051__sp_Q96565_AMNMT_HORVV
Osat12G0025370.1 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH