PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Osat02G0024590.1 Alkaloid T3O medium borderline
Osat02G0024630.1 Alkaloid T3O medium borderline
Osat02G0024640.1 Alkaloid T3O medium borderline
Osat02G0024700.1 Alkaloid T3O medium borderline
Osat02G0026410.1 Alkaloid T3O medium pass
Osat02G0026410.2 Alkaloid T3O medium pass
Osat02G0026900.1 Alkaloid T3O medium borderline
Osat02G0026910.1 Alkaloid T3O medium borderline
Osat02G0031370.1 Alkaloid T3O low borderline
Osat02G0031370.2 Alkaloid T3O low borderline
Osat02G0033750.1 Alkaloid T3O medium pass
Osat02G0033750.2 Alkaloid T3O low borderline
Osat02G0033750.3 Alkaloid T3O low borderline
Osat02G0042340.1 Alkaloid T3O medium pass
Osat02G0042340.2 Alkaloid T3O medium pass
Osat02G0042340.3 Alkaloid T3O medium pass
Osat02G0042340.4 Alkaloid T3O medium pass
Osat03G0001060.1 Alkaloid T3O medium borderline
Osat03G0003080.1 Alkaloid T3O medium pass
Osat03G0003190.1 Alkaloid T3O medium pass
Osat03G0003200.1 Alkaloid T3O low borderline
Osat03G0003210.1 Alkaloid T3O low borderline
Osat03G0003220.1 Alkaloid T3O low borderline
Osat03G0003240.1 Alkaloid T3O medium pass
Osat03G0005350.1 Alkaloid T3O low borderline
Osat03G0009430.1 Alkaloid T3O low borderline
Osat03G0009770.1 Alkaloid T3O medium pass
Osat03G0011240.1 Alkaloid T3O medium borderline
Osat03G0011250.1 Alkaloid T3O medium borderline
Osat03G0017150.1 Alkaloid T3O medium pass
Osat03G0025520.1 Alkaloid T3O medium borderline
Osat03G0027110.1 Alkaloid T3O medium borderline
Osat03G0027190.1 Alkaloid T3O medium borderline
Osat03G0027220.1 Alkaloid T3O medium borderline
Osat03G0027270.1 Alkaloid T3O medium borderline
Osat03G0027790.1 Alkaloid T3O medium pass
Osat03G0030570.1 Alkaloid T3O medium borderline
Osat03G0031160.1 Alkaloid T3O medium pass
Osat03G0031160.2 Alkaloid T3O medium pass
Osat03G0038500.1 Alkaloid T3O medium borderline
Osat03G0039020.1 Alkaloid T3O low borderline
Osat03G0044290.1 Alkaloid T3O medium pass
Osat03G0045370.1 Alkaloid T3O medium borderline
Osat04G0000040.1 Alkaloid T3O medium borderline
Osat04G0004240.1 Alkaloid T3O medium borderline
Osat04G0004360.1 Alkaloid T3O medium borderline
Osat04G0012350.1 Alkaloid T3O medium borderline
Osat04G0021750.1 Alkaloid T3O medium borderline
Osat04G0027410.1 Alkaloid T3O low borderline
Osat04G0028120.1 Alkaloid T3O medium pass