PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Osat04G0028160.1 Alkaloid T3O medium pass
Osat04G0028160.2 Alkaloid T3O medium pass
Osat05G0006150.1 Alkaloid T3O medium pass
Osat05G0007480.1 Alkaloid T3O medium pass
Osat05G0008220.1 Alkaloid T3O medium pass
Osat05G0017870.1 Alkaloid T3O medium pass
Osat05G0020620.1 Alkaloid T3O medium borderline
Osat05G0022080.1 Alkaloid T3O low borderline
Osat05G0025510.1 Alkaloid T3O medium borderline
Osat05G0025510.2 Alkaloid T3O medium borderline
Osat06G0000140.1 Alkaloid T3O medium borderline
Osat06G0000750.1 Alkaloid T3O medium pass
Osat06G0015630.1 Alkaloid T3O medium borderline
Osat06G0019440.1 Alkaloid T3O medium borderline
Osat06G0019660.1 Alkaloid T3O medium borderline
Osat06G0019760.1 Alkaloid T3O medium borderline
Osat06G0023390.1 Alkaloid T3O medium pass
Osat06G0025370.1 Alkaloid T3O medium borderline
Osat06G0026410.1 Alkaloid T3O medium borderline
Osat06G0028020.1 Alkaloid T3O medium borderline
Osat06G0028030.1 Alkaloid T3O medium borderline
Osat06G0028050.1 Alkaloid T3O medium borderline
Osat06G0028090.1 Alkaloid T3O medium borderline
Osat06G0028100.1 Alkaloid T3O medium borderline
Osat06G0028110.1 Alkaloid T3O medium borderline
Osat06G0028120.1 Alkaloid T3O medium borderline
Osat06G0028140.1 Alkaloid T3O medium borderline
Osat06G0028150.1 Alkaloid T3O medium borderline
Osat06G0030240.1 Alkaloid T3O medium borderline
Osat06G0030890.1 Alkaloid T3O medium pass
Osat07G0008650.1 Alkaloid T3O medium borderline
Osat07G0008690.1 Alkaloid T3O medium borderline
Osat07G0008740.1 Alkaloid T3O medium borderline
Osat07G0012790.1 Alkaloid T3O medium borderline
Osat07G0012830.1 Alkaloid T3O medium borderline
Osat07G0020140.1 Alkaloid T3O medium pass
Osat07G0020170.1 Alkaloid T3O medium pass
Osat07G0020170.3 Alkaloid T3O medium pass
Osat07G0020190.1 Alkaloid T3O medium pass
Osat07G0020200.1 Alkaloid T3O medium pass
Osat07G0020210.1 Alkaloid T3O medium pass
Osat07G0020220.1 Alkaloid T3O medium pass
Osat07G0020230.1 Alkaloid T3O low borderline
Osat07G0020240.1 Alkaloid T3O medium pass
Osat07G0020240.2 Alkaloid T3O medium pass
Osat07G0020250.1 Alkaloid T3O medium pass
Osat07G0032050.1 Alkaloid T3O medium pass
Osat08G0000410.1 Alkaloid T3O medium borderline
Osat08G0000460.1 Alkaloid T3O medium borderline
Osat08G0000480.1 Alkaloid T3O medium borderline