PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Osat08G0003690.1 Alkaloid T3O medium borderline
Osat08G0010770.1 Alkaloid T3O medium pass
Osat08G0010890.1 Alkaloid T3O low borderline
Osat08G0021980.1 Alkaloid T3O medium borderline
Osat08G0025420.1 Alkaloid T3O medium borderline
Osat08G0025430.1 Alkaloid T3O medium borderline
Osat08G0025450.1 Alkaloid T3O medium borderline
Osat08G0025450.3 Alkaloid T3O medium borderline
Osat08G0025460.1 Alkaloid T3O medium borderline
Osat08G0028580.1 Alkaloid T3O medium borderline
Osat09G0003580.1 Alkaloid T3O medium borderline
Osat09G0003620.1 Alkaloid T3O medium borderline
Osat09G0004280.1 Alkaloid T3O medium borderline
Osat09G0014980.1 Alkaloid T3O medium borderline
Osat09G0015000.1 Alkaloid T3O medium borderline
Osat09G0015010.1 Alkaloid T3O medium borderline
Osat09G0015440.1 Alkaloid T3O medium borderline
Osat09G0015450.1 Alkaloid T3O medium borderline
Osat09G0021200.1 Alkaloid T3O medium borderline
Osat09G0021210.1 Alkaloid T3O medium borderline
Osat10G0004450.1 Alkaloid T3O medium borderline
Osat10G0004500.1 Alkaloid T3O medium borderline
Osat10G0004810.1 Alkaloid T3O medium borderline
Osat10G0004850.1 Alkaloid T3O medium borderline
Osat10G0005250.1 Alkaloid T3O low borderline
Osat10G0008190.1 Alkaloid T3O low borderline
Osat10G0010970.1 Alkaloid T3O medium pass
Osat10G0012470.1 Alkaloid T3O medium borderline
Osat10G0015200.1 Alkaloid T3O medium borderline
Osat10G0015210.1 Alkaloid T3O medium borderline
Osat10G0015220.1 Alkaloid T3O medium borderline
Osat10G0018050.1 Alkaloid T3O medium pass
Osat10G0019990.1 Alkaloid T3O medium borderline
Osat10G0020190.1 Alkaloid T3O medium pass
Osat10G0020900.1 Alkaloid T3O medium pass
Osat10G0020900.2 Alkaloid T3O medium pass
Osat10G0020910.1 Alkaloid T3O medium pass
Osat11G0002780.1 Alkaloid T3O low borderline
Osat11G0003170.1 Alkaloid T3O medium pass
Osat11G0003810.1 Alkaloid T3O low borderline
Osat11G0016410.1 Alkaloid T3O medium borderline
Osat11G0025820.1 Alkaloid T3O medium borderline
Osat11G0025830.1 Alkaloid T3O medium borderline
Osat12G0001430.1 Alkaloid T3O medium pass
Osat12G0002600.1 Alkaloid T3O low borderline
Osat12G0002940.1 Alkaloid T3O medium pass
Osat12G0007030.1 Alkaloid T3O medium borderline
Osat12G0010820.1 Alkaloid T3O medium borderline
Osat12G0012000.1 Alkaloid T3O low borderline
Osat12G0018560.1 Alkaloid T3O medium borderline