Oryza sativa (oryza_sativa)
Imported from atlas release summary for Oryza sativa.
2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2290
Candidate Genes
C4H
6.02%
C3'H/CYP98A
5.91%
BAHD
5.84%
POD
4.43%
UGT
4.23%
7DLGT
3.79%
UFGT
3.69%
4CL
3.6%
Other Families
62.5%
More Families (97)
IFS
202
3.56%
T3O
201
3.55%
CYP76
163
2.88%
F3'H/CYP75B
130
2.29%
DWF4/CYP90B1
130
2.29%
F3H
122
2.15%
BR6OX2/CYP85A2
115
2.03%
NMT
111
1.96%
SMT1/SMT2/SMT3
111
1.96%
CYP71
105
1.85%
STR
84
1.48%
CAD
83
1.46%
TRI/TRII
82
1.45%
SGD
74
1.31%
CAS
73
1.29%
TPS
71
1.25%
PYKS
65
1.15%
H6H
63
1.11%
GES
59
1.04%
G8O/G8H
56
0.99%
CODM/T6ODM
55
0.97%
IFR
54
0.95%
CCR
53
0.93%
ANR
52
0.92%
CSE
51
0.9%
SLS
49
0.86%
COMT
49
0.86%
PMT
47
0.83%
FNS
44
0.78%
RAS
44
0.78%
HCT
42
0.74%
LAC
40
0.71%
T16H
39
0.69%
PAL
39
0.69%
CYP90D1
39
0.69%
NCS
37
0.65%
GS
35
0.62%
CHS
35
0.62%
16OMT
34
0.6%
CPD/CYP90A1
31
0.55%
8HGO
29
0.51%
CYP51G1
29
0.51%
IO
28
0.49%
DFR
27
0.48%
F3'5'H/CYP75A
26
0.46%
BR6OX1/CYP85A1
26
0.46%
COR
24
0.42%
F5H/CYP84A
24
0.42%
LAMT
22
0.39%
BBE
20
0.35%
CNMT
18
0.32%
TAT
18
0.32%
FPPS
16
0.28%
XMT_MXMT_DXMT
15
0.26%
ANS/LDOX
15
0.26%
ROT3/CYP90C1
14
0.25%
7DLH
13
0.23%
CYP719
11
0.19%
CCoAOMT
11
0.19%
SQS/FDFT1
11
0.19%
GGPPS
11
0.19%
CYP80B1
9
0.16%
CPR
9
0.16%
TYDC_DDC
8
0.14%
MPO
8
0.14%
ADC
8
0.14%
HPPR
8
0.14%
SMO1/SMO2
8
0.14%
AACT
8
0.14%
CHI
7
0.12%
SQE
7
0.12%
MCT/IspD
7
0.12%
DXS
7
0.12%
FK
6
0.11%
DWF1
6
0.11%
MVD
6
0.11%
MVK
6
0.11%
FLS
5
0.09%
HMGR
5
0.09%
CYP80F1
4
0.07%
ODC
3
0.05%
TDC
3
0.05%
ISY
3
0.05%
DWF7
3
0.05%
HMGS
3
0.05%
6OMT_4OMT_SOMT
2
0.04%
DET2
2
0.04%
DXR
2
0.04%
CMK/IspE
2
0.04%
MDS/IspF
2
0.04%
HDR/IspH
2
0.04%
IDI
2
0.04%
HYD1
1
0.02%
DWF5
1
0.02%
CPI1
1
0.02%
HDS/IspG
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 638 | 19 | BAHD (236) | View species results |
| Alkaloid pathway | 531 | 24 | 7DLGT (95) | View species results |
| Phenylpropanoid pathway | 462 | 11 | POD (239) | View species results |
| Flavonoid pathway | 317 | 11 | UFGT (201) | View species results |
| Steroid pathway | 180 | 13 | SMT1/SMT2/SMT3 (78) | View species results |
| Rosmarinic acid pathway | 162 | 7 | C4H (77) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2120 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 417 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Osat07G0030860.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Osat07G0030870.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Osat07G0030880.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Osat07G0030880.3 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Osat07G0030900.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Osat07G0030910.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Osat07G0032750.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Osat09G0002000.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Osat09G0006690.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Osat09G0016340.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Osat09G0016340.2 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Osat09G0016340.3 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Osat10G0016010.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Osat11G0011400.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Osat11G0011400.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Osat11G0011400.3 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Osat11G0011400.4 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Osat11G0015000.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Osat11G0015040.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Osat11G0015040.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Osat11G0015040.3 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Osat11G0015040.4 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Osat11G0015040.5 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Osat11G0015040.6 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Osat11G0015050.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Osat11G0015060.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Osat11G0015290.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Osat11G0019070.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Osat11G0026950.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Osat11G0027030.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Osat12G0009490.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Osat12G0010410.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |