PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2741
Candidate Protein Records
2290
Pathway-Level Records
5669
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Osat05G0020030.1 Alkaloid T16H medium borderline
Osat05G0027100.1 Alkaloid T16H medium borderline
Osat06G0011980.1 Alkaloid T16H medium borderline
Osat06G0028070.1 Alkaloid T16H medium borderline
Osat06G0028080.1 Alkaloid T16H medium borderline
Osat06G0028130.1 Alkaloid T16H medium borderline
Osat06G0028180.1 Alkaloid T16H medium borderline
Osat07G0008700.1 Alkaloid T16H medium borderline
Osat07G0017770.1 Alkaloid T16H medium borderline
Osat08G0000430.1 Alkaloid T16H medium borderline
Osat08G0000440.1 Alkaloid T16H medium borderline
Osat08G0000450.1 Alkaloid T16H medium borderline
Osat08G0023030.1 Alkaloid T16H medium borderline
Osat09G0016170.1 Alkaloid T16H medium borderline
Osat10G0006220.1 Alkaloid T16H medium borderline
Osat10G0007220.1 Alkaloid T16H medium borderline
Osat10G0007300.1 Alkaloid T16H medium borderline
Osat10G0010970.3 Alkaloid T16H low borderline
Osat10G0010970.4 Alkaloid T16H low borderline
Osat10G0020060.1 Alkaloid T16H medium borderline
Osat11G0012540.1 Alkaloid T16H medium borderline
Osat11G0016410.2 Alkaloid T16H medium pass
Osat11G0016530.1 Alkaloid T16H medium borderline
Osat11G0016540.1 Alkaloid T16H medium pass
Osat11G0019220.1 Alkaloid T16H medium borderline
Osat01G0006470.1 Alkaloid T3O medium pass
Osat01G0006480.1 Alkaloid T3O medium pass
Osat01G0007470.1 Alkaloid T3O medium pass
Osat01G0007470.2 Alkaloid T3O medium pass
Osat01G0008500.1 Alkaloid T3O medium pass
Osat01G0008510.1 Alkaloid T3O medium pass
Osat01G0008520.1 Alkaloid T3O medium pass
Osat01G0008530.1 Alkaloid T3O medium pass
Osat01G0009720.1 Alkaloid T3O medium borderline
Osat01G0009740.1 Alkaloid T3O medium borderline
Osat01G0019260.1 Alkaloid T3O medium borderline
Osat01G0023060.1 Alkaloid T3O medium borderline
Osat01G0033400.1 Alkaloid T3O medium borderline
Osat01G0040620.1 Alkaloid T3O low borderline
Osat01G0040630.1 Alkaloid T3O medium pass
Osat01G0040640.1 Alkaloid T3O low borderline
Osat01G0040660.1 Alkaloid T3O low borderline
Osat01G0040670.1 Alkaloid T3O low borderline
Osat01G0040690.1 Alkaloid T3O low borderline
Osat01G0040720.1 Alkaloid T3O medium pass
Osat01G0044360.1 Alkaloid T3O low borderline
Osat01G0044620.1 Alkaloid T3O medium pass
Osat01G0044620.2 Alkaloid T3O medium pass
Osat01G0051370.1 Alkaloid T3O low borderline
Osat01G0051380.1 Alkaloid T3O low borderline