PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Osat03G0041940.1 Alkaloid 7DLGT low borderline
Osat03G0042220.1 Alkaloid 7DLGT low borderline
Osat03G0043460.1 Alkaloid 7DLGT medium pass
Osat03G0044730.1 Alkaloid 7DLGT medium pass
Osat04G0005780.1 Alkaloid 7DLGT low borderline
Osat04G0005790.1 Alkaloid 7DLGT low borderline
Osat04G0005800.1 Alkaloid 7DLGT medium pass
Osat04G0005890.1 Alkaloid 7DLGT low borderline
Osat04G0005910.1 Alkaloid 7DLGT medium pass
Osat04G0005920.1 Alkaloid 7DLGT low borderline
Osat04G0005930.1 Alkaloid 7DLGT medium pass
Osat04G0005940.1 Alkaloid 7DLGT low borderline
Osat04G0008740.1 Alkaloid 7DLGT low borderline
Osat04G0008770.1 Alkaloid 7DLGT low borderline
Osat04G0008780.1 Alkaloid 7DLGT low borderline
Osat04G0008810.1 Alkaloid 7DLGT low borderline
Osat04G0008880.1 Alkaloid 7DLGT low borderline
Osat04G0008880.2 Alkaloid 7DLGT low borderline
Osat04G0008880.3 Alkaloid 7DLGT low borderline
Osat04G0008880.4 Alkaloid 7DLGT low borderline
Osat04G0008920.1 Alkaloid 7DLGT low borderline
Osat04G0010640.1 Alkaloid 7DLGT low borderline
Osat04G0011130.1 Alkaloid 7DLGT low borderline
Osat04G0011140.1 Alkaloid 7DLGT medium pass
Osat04G0011410.1 Alkaloid 7DLGT medium pass
Osat04G0011420.1 Alkaloid 7DLGT medium pass
Osat04G0011470.1 Alkaloid 7DLGT medium pass
Osat04G0011480.1 Alkaloid 7DLGT medium pass
Osat04G0011650.1 Alkaloid 7DLGT medium pass
Osat04G0011660.1 Alkaloid 7DLGT low borderline
Osat04G0011760.1 Alkaloid 7DLGT medium pass
Osat04G0011770.1 Alkaloid 7DLGT medium pass
Osat04G0019600.1 Alkaloid 7DLGT medium pass
Osat04G0023690.1 Alkaloid 7DLGT medium pass
Osat04G0024910.1 Alkaloid 7DLGT low borderline
Osat04G0024920.1 Alkaloid 7DLGT low borderline
Osat04G0025000.2 Alkaloid 7DLGT medium pass
Osat04G0025000.3 Alkaloid 7DLGT low borderline
Osat04G0027190.1 Alkaloid 7DLGT low borderline
Osat04G0027200.1 Alkaloid 7DLGT medium pass
Osat04G0027210.1 Alkaloid 7DLGT medium pass
Osat04G0027800.1 Alkaloid 7DLGT medium pass
Osat04G0027820.1 Alkaloid 7DLGT medium pass
Osat04G0034130.1 Alkaloid 7DLGT low borderline
Osat05G0005850.1 Alkaloid 7DLGT low borderline
Osat05G0005870.1 Alkaloid 7DLGT medium pass
Osat05G0006050.1 Alkaloid 7DLGT low borderline
Osat05G0008550.1 Alkaloid 7DLGT low borderline
Osat05G0020980.1 Alkaloid 7DLGT low borderline
Osat05G0025480.1 Alkaloid 7DLGT low borderline