PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Osat08G0005910.1 Flavonoid ANR medium borderline
Osat08G0011570.1 Flavonoid ANR medium borderline
Osat08G0020960.1 Flavonoid ANR medium borderline
Osat09G0013510.1 Flavonoid ANR medium borderline
Osat09G0013510.2 Flavonoid ANR medium borderline
Osat09G0013510.3 Flavonoid ANR medium borderline
Osat09G0018560.1 Flavonoid ANR medium borderline
Osat09G0018570.1 Flavonoid ANR low borderline
Osat09G0018580.1 Flavonoid ANR medium borderline
Osat09G0018590.1 Flavonoid ANR medium borderline
Osat09G0018590.2 Flavonoid ANR medium borderline
Osat09G0018600.1 Flavonoid ANR medium borderline
Osat09G0018610.1 Flavonoid ANR medium borderline
Osat09G0018610.2 Flavonoid ANR medium borderline
Osat09G0018610.3 Flavonoid ANR medium borderline
Osat09G0018610.4 Flavonoid ANR medium borderline
Osat10G0017450.1 Flavonoid ANR medium borderline
Osat10G0024600.1 Flavonoid ANR low borderline
Osat11G0011470.1 Flavonoid ANR low borderline
Osat11G0011470.2 Flavonoid ANR low borderline
Osat01G0008390.1 Flavonoid ANS/LDOX medium borderline
Osat02G0028990.1 Flavonoid ANS/LDOX medium borderline
Osat02G0028990.2 Flavonoid ANS/LDOX medium borderline
Osat03G0024360.2 Flavonoid ANS/LDOX medium borderline
Osat09G0009210.1 Flavonoid ANS/LDOX medium borderline
Osat10G0006850.1 Flavonoid ANS/LDOX low borderline
Osat10G0006850.2 Flavonoid ANS/LDOX low borderline
Osat10G0006850.3 Flavonoid ANS/LDOX low borderline
Osat10G0006850.4 Flavonoid ANS/LDOX low borderline
Osat10G0006850.5 Flavonoid ANS/LDOX low borderline
Osat10G0006850.6 Flavonoid ANS/LDOX low borderline
Osat10G0006850.7 Flavonoid ANS/LDOX low borderline
Osat10G0006850.8 Flavonoid ANS/LDOX low borderline
Osat10G0006850.9 Flavonoid ANS/LDOX low borderline
Osat10G0023260.1 Flavonoid ANS/LDOX medium borderline
Osat01G0033460.1 Flavonoid C4H low borderline
Osat01G0033470.1 Flavonoid C4H medium borderline
Osat01G0041870.1 Flavonoid C4H medium pass
Osat03G0027830.1 Flavonoid C4H low borderline
Osat05G0014150.1 Flavonoid C4H medium borderline
Osat06G0022100.1 Flavonoid C4H low borderline
Osat06G0023660.2 Flavonoid C4H medium borderline
Osat07G0029660.1 Flavonoid C4H medium borderline
Osat08G0015160.1 Flavonoid C4H low borderline
Osat08G0015160.2 Flavonoid C4H low borderline
Osat03G0043090.1 Flavonoid CHI low borderline
Osat03G0043090.2 Flavonoid CHI medium pass
Osat06G0007640.2 Flavonoid CHI low borderline
Osat11G0001210.1 Flavonoid CHI medium pass
Osat12G0001200.1 Flavonoid CHI medium pass