PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Osat05G0026000.1 Alkaloid 7DLGT low borderline
Osat05G0026010.1 Alkaloid 7DLGT low borderline
Osat05G0026020.1 Alkaloid 7DLGT low borderline
Osat05G0026030.1 Alkaloid 7DLGT low borderline
Osat05G0028000.1 Alkaloid 7DLGT medium pass
Osat05G0028010.1 Alkaloid 7DLGT medium pass
Osat05G0028020.1 Alkaloid 7DLGT low borderline
Osat05G0028030.1 Alkaloid 7DLGT medium pass
Osat05G0028060.1 Alkaloid 7DLGT low borderline
Osat05G0028080.1 Alkaloid 7DLGT low borderline
Osat05G0028090.1 Alkaloid 7DLGT medium pass
Osat05G0030030.1 Alkaloid 7DLGT low borderline
Osat06G0006510.1 Alkaloid 7DLGT low borderline
Osat06G0006860.1 Alkaloid 7DLGT medium pass
Osat06G0008190.1 Alkaloid 7DLGT low borderline
Osat06G0008550.1 Alkaloid 7DLGT low borderline
Osat06G0008940.1 Alkaloid 7DLGT medium pass
Osat06G0012170.1 Alkaloid 7DLGT medium pass
Osat06G0012880.1 Alkaloid 7DLGT low borderline
Osat06G0012910.1 Alkaloid 7DLGT low borderline
Osat06G0012920.1 Alkaloid 7DLGT low borderline
Osat06G0012940.1 Alkaloid 7DLGT low borderline
Osat06G0012970.1 Alkaloid 7DLGT low borderline
Osat06G0012980.1 Alkaloid 7DLGT low borderline
Osat06G0013460.1 Alkaloid 7DLGT medium pass
Osat06G0013510.1 Alkaloid 7DLGT medium pass
Osat06G0013530.1 Alkaloid 7DLGT low borderline
Osat06G0013550.1 Alkaloid 7DLGT low borderline
Osat06G0013580.1 Alkaloid 7DLGT medium pass
Osat06G0016670.1 Alkaloid 7DLGT medium pass
Osat06G0024800.1 Alkaloid 7DLGT low borderline
Osat06G0024810.1 Alkaloid 7DLGT low borderline
Osat06G0024920.1 Alkaloid 7DLGT low borderline
Osat06G0024950.1 Alkaloid 7DLGT low borderline
Osat07G0003670.1 Alkaloid 7DLGT medium pass
Osat07G0007480.1 Alkaloid 7DLGT low borderline
Osat07G0007510.1 Alkaloid 7DLGT low borderline
Osat07G0007550.1 Alkaloid 7DLGT medium pass
Osat07G0007560.1 Alkaloid 7DLGT low borderline
Osat07G0009930.1 Alkaloid 7DLGT medium pass
Osat07G0009940.1 Alkaloid 7DLGT high pass
Osat07G0009990.1 Alkaloid 7DLGT medium pass
Osat07G0010020.1 Alkaloid 7DLGT high pass
Osat07G0010030.1 Alkaloid 7DLGT medium pass
Osat07G0010150.1 Alkaloid 7DLGT medium pass
Osat07G0010590.1 Alkaloid 7DLGT medium pass
Osat07G0018000.1 Alkaloid 7DLGT medium pass
Osat07G0018010.1 Alkaloid 7DLGT medium pass
Osat07G0018050.1 Alkaloid 7DLGT medium pass
Osat07G0018130.1 Alkaloid 7DLGT medium pass