PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Osat07G0018140.1 Alkaloid 7DLGT medium pass
Osat07G0018180.1 Alkaloid 7DLGT medium pass
Osat07G0018200.1 Alkaloid 7DLGT medium pass
Osat07G0019080.1 Alkaloid 7DLGT medium pass
Osat07G0019110.1 Alkaloid 7DLGT low borderline
Osat07G0019120.1 Alkaloid 7DLGT medium pass
Osat07G0019150.1 Alkaloid 7DLGT low borderline
Osat07G0019290.1 Alkaloid 7DLGT low borderline
Osat07G0019550.1 Alkaloid 7DLGT low borderline
Osat07G0019560.1 Alkaloid 7DLGT low borderline
Osat07G0023370.1 Alkaloid 7DLGT low borderline
Osat07G0027700.1 Alkaloid 7DLGT medium pass
Osat07G0030580.1 Alkaloid 7DLGT medium pass
Osat07G0031440.1 Alkaloid 7DLGT low borderline
Osat08G0004940.1 Alkaloid 7DLGT medium pass
Osat08G0004990.1 Alkaloid 7DLGT high pass
Osat08G0010200.1 Alkaloid 7DLGT low borderline
Osat08G0014790.1 Alkaloid 7DLGT low borderline
Osat08G0018490.1 Alkaloid 7DLGT medium pass
Osat08G0024060.1 Alkaloid 7DLGT low borderline
Osat08G0024080.1 Alkaloid 7DLGT medium pass
Osat08G0024110.1 Alkaloid 7DLGT low borderline
Osat09G0001240.1 Alkaloid 7DLGT medium pass
Osat09G0002010.1 Alkaloid 7DLGT low borderline
Osat09G0004920.1 Alkaloid 7DLGT medium pass
Osat09G0007710.1 Alkaloid 7DLGT low borderline
Osat09G0007750.1 Alkaloid 7DLGT medium pass
Osat09G0010960.1 Alkaloid 7DLGT low borderline
Osat09G0010970.1 Alkaloid 7DLGT low borderline
Osat09G0018030.1 Alkaloid 7DLGT low borderline
Osat09G0020400.1 Alkaloid 7DLGT low borderline
Osat09G0020410.1 Alkaloid 7DLGT low borderline
Osat09G0020430.1 Alkaloid 7DLGT low borderline
Osat09G0020450.1 Alkaloid 7DLGT low borderline
Osat10G0001320.1 Alkaloid 7DLGT low borderline
Osat10G0004150.1 Alkaloid 7DLGT medium pass
Osat10G0005200.1 Alkaloid 7DLGT medium pass
Osat10G0006240.1 Alkaloid 7DLGT low borderline
Osat10G0007350.1 Alkaloid 7DLGT medium pass
Osat10G0007880.1 Alkaloid 7DLGT low borderline
Osat10G0007910.1 Alkaloid 7DLGT low borderline
Osat10G0007930.1 Alkaloid 7DLGT medium pass
Osat10G0015340.1 Alkaloid 7DLGT medium pass
Osat11G0003310.1 Alkaloid 7DLGT low borderline
Osat11G0007390.1 Alkaloid 7DLGT low borderline
Osat11G0015140.1 Alkaloid 7DLGT medium pass
Osat11G0015480.1 Alkaloid 7DLGT medium pass
Osat11G0015970.1 Alkaloid 7DLGT low borderline
Osat11G0016190.1 Alkaloid 7DLGT low borderline
Osat11G0023700.1 Alkaloid 7DLGT medium pass