Quercus lobata (quercus_lobata)
/
Imported from atlas release summary for Quercus lobata.
2899
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2899
Candidate Genes
C4H
6.51%
C3'H/CYP98A
6.09%
UGT
5.47%
7DLGT
4.83%
UFGT
4.63%
BAHD
4.56%
CYP76
4.14%
IFS
3.88%
Other Families
59.89%
More Families (97)
T3O
255
3.79%
POD
216
3.21%
DWF4/CYP90B1
194
2.88%
F3H
171
2.54%
4CL
162
2.41%
CAD
142
2.11%
F3'H/CYP75B
138
2.05%
CAS
132
1.96%
BR6OX2/CYP85A2
118
1.75%
TRI/TRII
116
1.72%
CODM/T6ODM
104
1.54%
STR
96
1.43%
H6H
96
1.43%
NMT
87
1.29%
TPS
87
1.29%
SGD
84
1.25%
SMT1/SMT2/SMT3
82
1.22%
LAC
81
1.2%
GES
80
1.19%
CYP71
80
1.19%
COMT
73
1.08%
GS
60
0.89%
T16H
58
0.86%
G8O/G8H
58
0.86%
HCT
56
0.83%
FNS
54
0.8%
CYP90D1
54
0.8%
IFR
51
0.76%
16OMT
48
0.71%
IO
47
0.7%
TAT
47
0.7%
F3'5'H/CYP75A
40
0.59%
7DLH
39
0.58%
PYKS
37
0.55%
CSE
37
0.55%
F5H/CYP84A
37
0.55%
RAS
35
0.52%
BR6OX1/CYP85A1
35
0.52%
LAMT
34
0.51%
PMT
34
0.51%
BBE
32
0.48%
NCS
31
0.46%
8HGO
30
0.45%
SLS
29
0.43%
ANR
29
0.43%
CPD/CYP90A1
27
0.4%
CCR
22
0.33%
ISY
21
0.31%
PAL
21
0.31%
DFR
20
0.3%
CYP51G1
19
0.28%
TYDC_DDC
18
0.27%
ROT3/CYP90C1
18
0.27%
ANS/LDOX
17
0.25%
CCoAOMT
16
0.24%
MPO
15
0.22%
HPPR
15
0.22%
CNMT
14
0.21%
COR
14
0.21%
GGPPS
12
0.18%
FPPS
12
0.18%
CYP719
11
0.16%
CYP80F1
10
0.15%
SQS/FDFT1
10
0.15%
CHS
9
0.13%
HDR/IspH
9
0.13%
DXS
7
0.1%
CYP80B1
6
0.09%
6OMT_4OMT_SOMT
6
0.09%
MVK
6
0.09%
DWF7
5
0.07%
SQE
5
0.07%
AACT
5
0.07%
CPR
4
0.06%
CPI1
4
0.06%
DET2
4
0.06%
MVD
4
0.06%
DXR
4
0.06%
FLS
3
0.04%
HMGR
3
0.04%
MCT/IspD
3
0.04%
ODC
2
0.03%
TDC
2
0.03%
XMT_MXMT_DXMT
2
0.03%
CHI
2
0.03%
SMO1/SMO2
2
0.03%
DWF5
2
0.03%
FK
2
0.03%
CMK/IspE
2
0.03%
MDS/IspF
2
0.03%
HMGS
2
0.03%
IDI
2
0.03%
ADC
1
0.01%
DWF1
1
0.01%
HYD1
1
0.01%
HDS/IspG
1
0.01%
PMK
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 826 | 19 | UGT (341) | View species results |
| Alkaloid pathway | 706 | 25 | 7DLGT (169) | View species results |
| Phenylpropanoid pathway | 535 | 12 | POD (200) | View species results |
| Flavonoid pathway | 393 | 10 | UFGT (289) | View species results |
| Rosmarinic acid pathway | 235 | 7 | C4H (110) | View species results |
| Steroid pathway | 204 | 14 | CAS (120) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2661 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 398 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| quercus_lobata_QL10p015369 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| quercus_lobata_QL10p015387 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| quercus_lobata_QL10p015446 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| quercus_lobata_QL10p015499 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| quercus_lobata_QL10p015505 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| quercus_lobata_QL11p013743 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| quercus_lobata_QL11p036095 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| quercus_lobata_QL12p023902 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| quercus_lobata_QL12p034278 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| quercus_lobata_QL93p0245_0009 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| quercus_lobata_QL93p0245_0020 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| quercus_lobata_QL93p0245_0024 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| quercus_lobata_QL93p1999_0086 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| quercus_lobata_QL93p1999_0098 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| quercus_lobata_QL93p1999_0109 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| quercus_lobata_QL93p1999_0114 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |