PlantSME Plant secondary metabolism enzyme database

Quercus lobata (quercus_lobata)

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Imported from atlas release summary for Quercus lobata.

2899
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.49% Alkaloid pathway 24.35% Phenylpropanoid pathway 18.45% Flavonoid pathway 13.56% Rosmarinic acid pathway 8.11% Steroid pathway 7.04%
Family Distribution
C4H 6.51% C3'H/CYP98A 6.09% UGT 5.47% 7DLGT 4.83% UFGT 4.63% BAHD 4.56% CYP76 4.14% IFS 3.88%
Other Families 59.89%
More Families (97)
T3O 255 3.79% POD 216 3.21% DWF4/CYP90B1 194 2.88% F3H 171 2.54% 4CL 162 2.41% CAD 142 2.11% F3'H/CYP75B 138 2.05% CAS 132 1.96% BR6OX2/CYP85A2 118 1.75% TRI/TRII 116 1.72% CODM/T6ODM 104 1.54% STR 96 1.43% H6H 96 1.43% NMT 87 1.29% TPS 87 1.29% SGD 84 1.25% SMT1/SMT2/SMT3 82 1.22% LAC 81 1.2% GES 80 1.19% CYP71 80 1.19% COMT 73 1.08% GS 60 0.89% T16H 58 0.86% G8O/G8H 58 0.86% HCT 56 0.83% FNS 54 0.8% CYP90D1 54 0.8% IFR 51 0.76% 16OMT 48 0.71% IO 47 0.7% TAT 47 0.7% F3'5'H/CYP75A 40 0.59% 7DLH 39 0.58% PYKS 37 0.55% CSE 37 0.55% F5H/CYP84A 37 0.55% RAS 35 0.52% BR6OX1/CYP85A1 35 0.52% LAMT 34 0.51% PMT 34 0.51% BBE 32 0.48% NCS 31 0.46% 8HGO 30 0.45% SLS 29 0.43% ANR 29 0.43% CPD/CYP90A1 27 0.4% CCR 22 0.33% ISY 21 0.31% PAL 21 0.31% DFR 20 0.3% CYP51G1 19 0.28% TYDC_DDC 18 0.27% ROT3/CYP90C1 18 0.27% ANS/LDOX 17 0.25% CCoAOMT 16 0.24% MPO 15 0.22% HPPR 15 0.22% CNMT 14 0.21% COR 14 0.21% GGPPS 12 0.18% FPPS 12 0.18% CYP719 11 0.16% CYP80F1 10 0.15% SQS/FDFT1 10 0.15% CHS 9 0.13% HDR/IspH 9 0.13% DXS 7 0.1% CYP80B1 6 0.09% 6OMT_4OMT_SOMT 6 0.09% MVK 6 0.09% DWF7 5 0.07% SQE 5 0.07% AACT 5 0.07% CPR 4 0.06% CPI1 4 0.06% DET2 4 0.06% MVD 4 0.06% DXR 4 0.06% FLS 3 0.04% HMGR 3 0.04% MCT/IspD 3 0.04% ODC 2 0.03% TDC 2 0.03% XMT_MXMT_DXMT 2 0.03% CHI 2 0.03% SMO1/SMO2 2 0.03% DWF5 2 0.03% FK 2 0.03% CMK/IspE 2 0.03% MDS/IspF 2 0.03% HMGS 2 0.03% IDI 2 0.03% ADC 1 0.01% DWF1 1 0.01% HYD1 1 0.01% HDS/IspG 1 0.01% PMK 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 826 19 UGT (341) View species results
Alkaloid pathway 706 25 7DLGT (169) View species results
Phenylpropanoid pathway 535 12 POD (200) View species results
Flavonoid pathway 393 10 UFGT (289) View species results
Rosmarinic acid pathway 235 7 C4H (110) View species results
Steroid pathway 204 14 CAS (120) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2661 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 398 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status
quercus_lobata_QL02p079909 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL04p048531 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL05p019156 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL05p054444 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL05p054481 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL05p054584 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL05p054932 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL05p086068 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL05p087102 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL05p087171 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL07p007342 Alkaloid TYDC_DDC low borderline
quercus_lobata_QL07p013913 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL07p013979 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL08p036626 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL09p042078 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL09p042231 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL11p011578 Alkaloid TYDC_DDC medium borderline
quercus_lobata_QL11p018632 Alkaloid TYDC_DDC low borderline