PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1607
Candidate Protein Records
1461
Pathway-Level Records
3344
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 25.39% Terpenoid pathway 24.44% Alkaloid pathway 22.66% Flavonoid pathway 15.13% Rosmarinic acid pathway 8.42% Steroid pathway 3.97%
Family Distribution
C3'H/CYP98A 6.16% C4H 6.07% BAHD 5.08% 4CL 4.96% POD 4.69% T3O 4.07% UGT 3.98% UFGT 3.8%
Other Families 61.18%
More Families (94)
7DLGT 126 3.77% IFS 113 3.38% CYP76 102 3.05% DWF4/CYP90B1 85 2.54% F3H 78 2.33% F3'H/CYP75B 69 2.06% CSE 68 2.03% BR6OX2/CYP85A2 68 2.03% NMT 64 1.91% PYKS 61 1.82% CYP71 61 1.82% STR 53 1.58% CAD 47 1.41% COMT 44 1.32% SMT1/SMT2/SMT3 42 1.26% TRI/TRII 41 1.23% 16OMT 40 1.2% CHS 40 1.2% H6H 38 1.14% IFR 36 1.08% CODM/T6ODM 35 1.05% GS 35 1.05% ANR 32 0.96% LAC 31 0.93% SGD 30 0.9% HCT 29 0.87% RAS 29 0.87% PMT 28 0.84% CAS 26 0.78% CYP90D1 24 0.72% TPS 23 0.69% SLS 22 0.66% T16H 22 0.66% IO 21 0.63% GES 21 0.63% COR 20 0.6% FNS 18 0.54% CCR 17 0.51% NCS 16 0.48% TAT 16 0.48% F3'5'H/CYP75A 15 0.45% PAL 15 0.45% CYP51G1 15 0.45% AACT 13 0.39% 8HGO 11 0.33% F5H/CYP84A 11 0.33% 7DLH 10 0.3% G8O/G8H 9 0.27% FPPS 9 0.27% CNMT 8 0.24% BBE 8 0.24% CPD/CYP90A1 8 0.24% LAMT 7 0.21% BR6OX1/CYP85A1 7 0.21% CCoAOMT 6 0.18% CPR 6 0.18% HPPR 6 0.18% ROT3/CYP90C1 6 0.18% DXS 6 0.18% GGPPS 6 0.18% MVD 6 0.18% CYP719 5 0.15% MPO 5 0.15% CHI 5 0.15% DFR 5 0.15% MVK 5 0.15% TYDC_DDC 4 0.12% ANS/LDOX 4 0.12% SQS/FDFT1 4 0.12% SQE 4 0.12% DET2 4 0.12% HMGR 4 0.12% MCT/IspD 4 0.12% CYP80B1 3 0.09% ISY 3 0.09% TDC 3 0.09% PMK 3 0.09% 6OMT_4OMT_SOMT 2 0.06% FLS 2 0.06% FK 2 0.06% CMK/IspE 2 0.06% HDR/IspH 2 0.06% XMT_MXMT_DXMT 1 0.03% ADC 1 0.03% SMO1/SMO2 1 0.03% DWF7 1 0.03% CPI1 1 0.03% DWF5 1 0.03% DWF1 1 0.03% MDS/IspF 1 0.03% DXR 1 0.03% HDS/IspG 1 0.03% IDI 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Protein/Isoform Record Pathway Family Confidence Status Best Target
rhynchospora_breviuscula_mRNA8570 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
rhynchospora_breviuscula_mRNA8715 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
rhynchospora_breviuscula_mRNA8815 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
rhynchospora_breviuscula_mRNA8921 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
rhynchospora_breviuscula_mRNA9202 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
rhynchospora_breviuscula_mRNA9301 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
rhynchospora_breviuscula_mRNA9775 Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ