PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1607
Candidate Protein Records
1461
Pathway-Level Records
3344
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_breviuscula_mRNA8984 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_breviuscula_mRNA908 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_breviuscula_mRNA912 Phenylpropanoid C3'H/CYP98A medium pass
rhynchospora_breviuscula_mRNA9382 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_breviuscula_mRNA9609 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_breviuscula_mRNA9826 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_breviuscula_mRNA9827 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_breviuscula_mRNA9840 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_breviuscula_mRNA9841 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_breviuscula_mRNA9850 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_breviuscula_mRNA9917 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_breviuscula_mRNA10090 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_breviuscula_mRNA10091 Phenylpropanoid C4H/CYP73A medium borderline
rhynchospora_breviuscula_mRNA13016 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_breviuscula_mRNA13166 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_breviuscula_mRNA13170 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_breviuscula_mRNA13680 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_breviuscula_mRNA19642 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_breviuscula_mRNA8170 Phenylpropanoid C4H/CYP73A medium pass
rhynchospora_breviuscula_mRNA11599 Phenylpropanoid CAD medium pass
rhynchospora_breviuscula_mRNA12352 Phenylpropanoid CAD medium pass
rhynchospora_breviuscula_mRNA1238 Phenylpropanoid CAD medium pass
rhynchospora_breviuscula_mRNA13177 Phenylpropanoid CAD low borderline
rhynchospora_breviuscula_mRNA13271 Phenylpropanoid CAD medium pass
rhynchospora_breviuscula_mRNA13272 Phenylpropanoid CAD medium pass
rhynchospora_breviuscula_mRNA13390 Phenylpropanoid CAD low borderline
rhynchospora_breviuscula_mRNA13402 Phenylpropanoid CAD low borderline
rhynchospora_breviuscula_mRNA1649 Phenylpropanoid CAD medium pass
rhynchospora_breviuscula_mRNA17297 Phenylpropanoid CAD low borderline
rhynchospora_breviuscula_mRNA17298 Phenylpropanoid CAD low borderline
rhynchospora_breviuscula_mRNA17357 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA17358 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA17359 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA17360 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA17361 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA17362 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA17363 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA17364 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA17365 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA17463 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA18060 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA18061 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA18243 Phenylpropanoid CAD medium pass
rhynchospora_breviuscula_mRNA19794 Phenylpropanoid CAD medium pass
rhynchospora_breviuscula_mRNA20661 Phenylpropanoid CAD low borderline
rhynchospora_breviuscula_mRNA2345 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA3844 Phenylpropanoid CAD low borderline
rhynchospora_breviuscula_mRNA4234 Phenylpropanoid CAD medium borderline
rhynchospora_breviuscula_mRNA4287 Phenylpropanoid CAD low borderline
rhynchospora_breviuscula_mRNA4406 Phenylpropanoid CAD medium borderline